CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038268.1-P	Field mustard	nucleus	39.53	99.03
TraesCS5B01G349900.1	Wheat	nucleus	39.53	99.03
TraesCS1B01G301000.1	Wheat	nucleus	39.53	99.03
TraesCS1A01G295700.1	Wheat	nucleus	39.53	99.03
Solyc11g066160.1.1	Tomato	nucleus	39.53	99.03
OQU93370	Sorghum	nucleus	39.53	99.03
OQU85624	Sorghum	nucleus	39.53	99.03
EES18362	Sorghum	nucleus	39.53	99.03
EES12723	Sorghum	nucleus	39.53	99.03
EES01716	Sorghum	nucleus	39.53	99.03
EES00251	Sorghum	nucleus	39.53	99.03
EES00250	Sorghum	nucleus	39.53	99.03
EER96771	Sorghum	nucleus	39.53	99.03
EER95622	Sorghum	nucleus	39.53	99.03
Bra011929.1-P	Field mustard	nucleus	39.53	99.03
HORVU3Hr1G088160.1	Barley	nucleus	42.25	85.16
HORVU1Hr1G071760.1	Barley	nucleus, plastid	40.7	84.0
OQU89898	Sorghum	plastid	41.86	58.06

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	UniProt:A0A1W0VVX1	InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072
EnsemblPlants:OQU86251	ProteinID:OQU86251	ProteinID:OQU86251.1	PFAM:PF15511	PRINTS:PR00623	ScanProsite:PS00047
PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	EnsemblPlantsGene:SORBI_3003G057366	SUPFAM:SSF47113	UniParc:UPI0009DC87E9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:5092304..5094324

Molecular Weight (calculated)

28087.0 Da

IEP (calculated)

12.241

GRAVY (calculated)

-0.624

Length

258 amino acids

Sequence
(BLAST)

001: MPPSGRDASE ATPAYEVRRR PCRSRTGAAG ATAPTPVAAA SEAAPNPLQN RNFPRAHGAR RTARRNGQRH ETPTHPLLDP PSCLSANRSG AIPIQRLAPS
101: LAPLTRIAPP SDASQLFSRL YIIPPPPFRP IHPLHHPTTS NRNRKIPNPL GFAANMSGRG KGGKGLGKGG AKRHRKVLRD NIQGITKPAI RRLARRGGVK
201: RISGLIYEET RGVLKIFLEN VIRDAVTYTE HARRKTVTAM DVVYALKRQG RTLYGFGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.