Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93616 | Canola | nucleus | 55.38 | 100.0 |
| Zm00001d051478_P001 | Maize | nucleus | 55.38 | 100.0 |
| TraesCSU01G142200.1 | Wheat | nucleus | 55.38 | 100.0 |
| TraesCS1D01G290000.1 | Wheat | nucleus | 55.38 | 100.0 |
| TraesCS1B01G221600.1 | Wheat | nucleus | 55.38 | 100.0 |
| OQU93370 | Sorghum | nucleus | 55.38 | 100.0 |
| OQU85624 | Sorghum | nucleus | 55.38 | 100.0 |
| KRH10345 | Soybean | nucleus | 55.38 | 100.0 |
| EES18362 | Sorghum | nucleus | 55.38 | 100.0 |
| EES12723 | Sorghum | nucleus | 55.38 | 100.0 |
| EES01716 | Sorghum | nucleus | 55.38 | 100.0 |
| EES00251 | Sorghum | nucleus | 55.38 | 100.0 |
| EES00250 | Sorghum | nucleus | 55.38 | 100.0 |
| EER96771 | Sorghum | nucleus | 55.38 | 100.0 |
| EER95622 | Sorghum | nucleus | 55.38 | 100.0 |
| TraesCS7A01G178900.1 | Wheat | nucleus | 54.84 | 99.03 |
| GSMUA_Achr10P... | Banana | nucleus | 42.47 | 97.53 |
| Bra018682.1-P | Field mustard | nucleus | 53.23 | 96.12 |
| HORVU2Hr1G093680.3 | Barley | nucleus | 56.99 | 85.48 |
| OQU86251 | Sorghum | nucleus | 58.06 | 41.86 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | UniProt:A0A1W0W662 | InterPro:CENP-T/H4_C | GO:GO:0000786 | GO:GO:0000788 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042393 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H4 |
| InterPro:Histone_H4_CS | InterPro:IPR009072 | EnsemblPlants:OQU89898 | ProteinID:OQU89898 | ProteinID:OQU89898.1 | PFAM:PF15511 |
| PRINTS:PR00623 | ScanProsite:PS00047 | PANTHER:PTHR10484 | PANTHER:PTHR10484:SF160 | SMART:SM00417 | EnsemblPlantsGene:SORBI_3002G291066 |
| SUPFAM:SSF47113 | UniParc:UPI0009DC9019 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:66925061..66928134
Molecular Weight (calculated)
20280.7 Da
IEP (calculated)
12.106
GRAVY (calculated)
-0.649
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MHTARSSAAP PPFSATHLAS RGTKLPSRGS CLPPAPQRPC LYKTQPHTPP TPTSALVSPF TRAQHNHHPL LPNRGGDRRP AAEMSGRGKG GKGLGKGGAK
101: RHRKVLRDNI QGITKPAIRR LARRGGVKRI SGLIYEETRG VLKIFLENVI RDAVTYTEHA RRKTVTAMDV VYALKRQGRT LYGFGG
101: RHRKVLRDNI QGITKPAIRR LARRGGVKRI SGLIYEETRG VLKIFLENVI RDAVTYTEHA RRKTVTAMDV VYALKRQGRT LYGFGG
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.