Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018682.1-P | Field mustard | nucleus | 98.77 | 77.67 |
| Zm00001d051478_P001 | Maize | nucleus | 97.53 | 76.7 |
| AT3G53730.1 | Thale cress | nucleus | 97.53 | 76.7 |
| TraesCSU01G142200.1 | Wheat | nucleus | 97.53 | 76.7 |
| TraesCS7A01G178900.1 | Wheat | nucleus | 97.53 | 76.7 |
| TraesCS1D01G290000.1 | Wheat | nucleus | 97.53 | 76.7 |
| TraesCS1B01G221600.1 | Wheat | nucleus | 97.53 | 76.7 |
| Os09t0553100-00 | Rice | nucleus | 97.53 | 76.7 |
| KRH10345 | Soybean | nucleus | 97.53 | 76.7 |
| GSMUA_Achr9P04120_001 | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr8P20970_001 | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr7P15380_001 | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr3P27970_001 | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr3P05060_001 | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr1P15010_001 | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr1P07160_001 | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr11P... | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr10P... | Banana | nucleus | 97.53 | 76.7 |
| GSMUA_Achr10P... | Banana | nucleus | 97.53 | 76.7 |
| CDX93616 | Canola | nucleus | 97.53 | 76.7 |
| HORVU2Hr1G093680.3 | Barley | nucleus | 97.53 | 63.71 |
| GSMUA_Achr11P... | Banana | plastid | 97.53 | 52.67 |
| OQU89898 | Sorghum | plastid | 97.53 | 42.47 |
| GSMUA_Achr3P13890_001 | Banana | cytosol, nucleus, plastid, vacuole | 39.51 | 32.0 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046982 |
| EnsemblPlantsGene:GSMUA_Achr10G23620_001 | EnsemblPlants:GSMUA_Achr10P23620_001 | EnsemblPlants:GSMUA_Achr10T23620_001 | InterPro:Histone-fold | InterPro:Histone_H4 | InterPro:Histone_H4_CS |
| InterPro:IPR009072 | UniProt:M0RKT7 | PRINTS:PR00623 | ScanProsite:PS00047 | PANTHER:PTHR10484 | PANTHER:PTHR10484:SF160 |
| SMART:SM00417 | SUPFAM:SSF47113 | UniParc:UPI000294B765 | SEG:seg | : | : |
Description
Histone H4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23620_001]
Coordinates
chr10:-:28281324..28281855
Molecular Weight (calculated)
8875.1 Da
IEP (calculated)
12.330
GRAVY (calculated)
-0.611
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA RQGRTLYGFG G
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.