Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P27970_001 | Banana | nucleus | 68.67 | 100.0 |
| Zm00001d005791_P001 | Maize | nucleus | 68.67 | 100.0 |
| TraesCS6D01G061700.1 | Wheat | nucleus | 68.67 | 100.0 |
| TraesCS2B01G492400.1 | Wheat | nucleus | 68.67 | 100.0 |
| TraesCS2A01G417700.1 | Wheat | nucleus | 68.67 | 100.0 |
| TraesCS1B01G297200.1 | Wheat | nucleus | 68.67 | 100.0 |
| Solyc11g066160.1.1 | Tomato | nucleus | 68.67 | 100.0 |
| HORVU2Hr1G098320.1 | Barley | nucleus | 68.67 | 100.0 |
| GSMUA_Achr9P04120_001 | Banana | nucleus | 68.67 | 100.0 |
| GSMUA_Achr8P20970_001 | Banana | nucleus | 68.67 | 100.0 |
| GSMUA_Achr7P15380_001 | Banana | nucleus | 68.67 | 100.0 |
| AT3G46320.1 | Thale cress | nucleus | 68.67 | 100.0 |
| GSMUA_Achr3P05060_001 | Banana | nucleus | 68.67 | 100.0 |
| GSMUA_Achr1P15010_001 | Banana | nucleus | 68.67 | 100.0 |
| GSMUA_Achr1P07160_001 | Banana | nucleus | 68.67 | 100.0 |
| GSMUA_Achr11P... | Banana | nucleus | 68.67 | 100.0 |
| GSMUA_Achr10P... | Banana | nucleus | 68.67 | 100.0 |
| GSMUA_Achr10P... | Banana | nucleus | 68.67 | 100.0 |
| EES00250 | Sorghum | nucleus | 68.67 | 100.0 |
| CDX88717 | Canola | nucleus | 68.67 | 100.0 |
| AT5G59970.1 | Thale cress | nucleus | 68.67 | 100.0 |
| GSMUA_Achr10P... | Banana | nucleus | 52.67 | 97.53 |
| HORVU2Hr1G098340.4 | Barley | nucleus | 70.0 | 81.4 |
| HORVU1Hr1G071210.4 | Barley | nucleus | 70.0 | 78.95 |
| GSMUA_Achr3P13890_001 | Banana | cytosol, nucleus, plastid, vacuole | 36.0 | 54.0 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | InterPro:CENP-T/H4_C | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr11G24570_001 | EnsemblPlants:GSMUA_Achr11P24570_001 | EnsemblPlants:GSMUA_Achr11T24570_001 |
| InterPro:Histone-fold | InterPro:Histone_H4 | InterPro:Histone_H4_CS | InterPro:IPR009072 | UniProt:M0RV37 | PFAM:PF15511 |
| PRINTS:PR00623 | ScanProsite:PS00047 | PANTHER:PTHR10484 | PANTHER:PTHR10484:SF160 | SMART:SM00417 | SUPFAM:SSF47113 |
| TMHMM:TMhelix | UniParc:UPI000296A605 | SEG:seg | : | : | : |
Description
Histone H4 [Source:GMGC_GENE;Acc:GSMUA_Achr11G24570_001]
Coordinates
chr11:-:24049616..24050487
Molecular Weight (calculated)
16393.4 Da
IEP (calculated)
11.604
GRAVY (calculated)
-0.194
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAIHLRSLV TPFHDKYPRK PKPNVVASSC PILAVSGACG FCFALVAMSG RGKGGKGLGK GGAKRHRKVL RDNIQGITKP AIRRLARRGG VKRISGLIYE
101: ETRGVLKIFL ENVIRDAVTY TEHARRKTVT AMDVVYALKR QGRTLYGFGG
101: ETRGVLKIFL ENVIRDAVTY TEHARRKTVT AMDVVYALKR QGRTLYGFGG
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.