Factsheet for GSMUA_Achr3P13890_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15380_001	Banana	nucleus	54.0	52.43
Zm00001d042954_P001	Maize	nucleus	54.0	52.43
Zm00001d020585_P001	Maize	nucleus	54.0	52.43
TraesCS2D01G413100.1	Wheat	extracellular, golgi, nucleus	54.0	52.43
TraesCS2B01G436700.1	Wheat	nucleus	54.0	52.43
GSMUA_Achr9P04120_001	Banana	nucleus	54.0	52.43
GSMUA_Achr8P20970_001	Banana	nucleus	54.0	52.43
GSMUA_Achr3P27970_001	Banana	nucleus	54.0	52.43
GSMUA_Achr3P05060_001	Banana	nucleus	54.0	52.43
GSMUA_Achr1P15010_001	Banana	nucleus	54.0	52.43
GSMUA_Achr1P07160_001	Banana	nucleus	54.0	52.43
GSMUA_Achr11P...	Banana	nucleus	54.0	52.43
GSMUA_Achr10P...	Banana	nucleus	54.0	52.43
GSMUA_Achr10P...	Banana	nucleus	54.0	52.43
CDY06269	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.0	47.32
Os05t0462900-00	Rice	nucleus	42.0	42.42
HORVU1Hr1G070700.1	Barley	nucleus, plastid	54.0	41.86
KRH05416	Soybean	nucleus	34.0	41.46
GSMUA_Achr10P...	Banana	nucleus	32.0	39.51
GSMUA_Achr11P...	Banana	plastid	54.0	36.0
TraesCS1A01G403600.1	Wheat	nucleus	34.0	33.01

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr3G13890_001	EnsemblPlants:GSMUA_Achr3P13890_001	EnsemblPlants:GSMUA_Achr3T13890_001
InterPro:Histone-fold	InterPro:Histone_H4	InterPro:IPR009072	UniProt:M0SEF6	PFAM:PF15511	PRINTS:PR00623
PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	UniParc:UPI0002956269	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G13890_001]

Coordinates

chr3:-:13007639..13008118

Molecular Weight (calculated)

11397.0 Da

IEP (calculated)

10.188

GRAVY (calculated)

0.079

Length

100 amino acids

Sequence
(BLAST)

1: MLIYAFLLAM SPIQNHDAIQ SSPSIGDPFT FLITSIKAFF PHMEFIRPTR ETRGVLKIFL ENVIRDAVTY TEHARRKTVT AMDVVYALKR QGRTLYGFGG

Best Arabidopsis Sequence Match ( AT1G07660.2 )
(BLAST)

1: MSGRGKGGKG LGKGGPAIRR LARRGGVKRI SGLIYEETRG VLKIFLENVI RDAVTYTEHA RRKTVTAMDV VYALKRQGRT LYGFGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.