Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
18022940
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0466600-01 | Rice | nucleus | 71.72 | 68.93 |
| Zm00001d042954_P001 | Maize | nucleus | 71.72 | 68.93 |
| Zm00001d020585_P001 | Maize | nucleus | 71.72 | 68.93 |
| Os10t0539500-01 | Rice | extracellular, nucleus | 71.72 | 68.93 |
| Os09t0553100-00 | Rice | nucleus | 71.72 | 68.93 |
| Os09t0433600-01 | Rice | nucleus | 71.72 | 68.93 |
| Os07t0549900-00 | Rice | nucleus | 71.72 | 68.93 |
| Os05t0462700-01 | Rice | nucleus | 71.72 | 68.93 |
| Os04t0583600-01 | Rice | nucleus | 71.72 | 68.93 |
| Os03t0119900-01 | Rice | nucleus | 71.72 | 68.93 |
| Os02t0684500-00 | Rice | nucleus | 71.72 | 68.93 |
| Os01t0835900-00 | Rice | nucleus | 71.72 | 68.93 |
| TraesCS2B01G436700.1 | Wheat | nucleus | 70.71 | 67.96 |
| TraesCS2D01G413100.1 | Wheat | extracellular, golgi, nucleus | 70.71 | 67.96 |
| KRG98309 | Soybean | nucleus | 63.64 | 64.95 |
| HORVU1Hr1G070700.1 | Barley | nucleus, plastid | 73.74 | 56.59 |
| CDY06269 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 61.62 | 54.46 |
| TraesCS1A01G403600.1 | Wheat | nucleus | 53.54 | 51.46 |
| GSMUA_Achr3P13890_001 | Banana | cytosol, nucleus, plastid, vacuole | 42.42 | 42.0 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | UniProt:A0A0P0WNF9 | ProteinID:BAS94426.1 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H4 |
| InterPro:IPR009072 | EnsemblPlantsGene:Os05g0462900 | EnsemblPlants:Os05t0462900-00 | PRINTS:PR00623 | PANTHER:PTHR10484 | PANTHER:PTHR10484:SF160 |
| SMART:SM00417 | SUPFAM:SSF47113 | UniParc:UPI0003939DEF | : | : | : |
Description
Similar to Histone H4. (Os05t0462900-00)
Coordinates
chr5:-:22743760..22744188
Molecular Weight (calculated)
11048.8 Da
IEP (calculated)
11.353
GRAVY (calculated)
-0.035
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: SVAISGRGTS GARRHRIVFR GYIQGIAKPV IRRLARKGGV KRISGLIYKE TRGVLEIFLK NVICDAITYT EHAHRKTVMA MDVVYALKLQ GRTIYDFGG
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.