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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 15276429
nucleus: 18022940
nucleus: 18203134
plasma membrane: 18557835
extracellular: 19038476
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
extracellular: 24083427
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 15276429 doi
MM Khan, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 19038476 doi
XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim
Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G020060.1 Barley nucleus 100.0 100.0
Os01t0835900-00 Rice nucleus 100.0 100.0
Os02t0684500-00 Rice nucleus 100.0 100.0
Os03t0119900-01 Rice nucleus 100.0 100.0
Os04t0583600-01 Rice nucleus 100.0 100.0
Os05t0462700-01 Rice nucleus 100.0 100.0
Os05t0466600-01 Rice nucleus 100.0 100.0
Os07t0549900-00 Rice nucleus 100.0 100.0
Os09t0553100-00 Rice nucleus 100.0 100.0
Os10t0539500-01 Rice extracellular, nucleus 100.0 100.0
Solyc11g066160.1.1 Tomato nucleus 100.0 100.0
TraesCS2B01G436500.1 Wheat nucleus 100.0 100.0
Os05t0462900-00 Rice nucleus 68.93 71.72
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.5EntrezGene:4327457EntrezGene:4330345EntrezGene:4331427EntrezGene:4336777
EntrezGene:4339029EntrezGene:4339049EntrezGene:4347135EntrezGene:4347799EntrezGene:4349248EntrezGene:9270544
ProteinID:AAG46106.1ProteinID:AAM93740.1ProteinID:AAO15293.1ProteinID:AAP54838.1ProteinID:AAT39190.1ProteinID:AAT58763.1
ProteinID:AAT58785.1ProteinID:AAU90170.1ProteinID:ABF93682.1EMBL:AK058686EMBL:AK058741EMBL:AK059019
EMBL:AK059098EMBL:AK105816EMBL:AK119240EMBL:AK119699ProteinID:BAB89744.1ProteinID:BAC57734.1
ProteinID:BAD07563.1ProteinID:BAD27874.1ProteinID:BAD33556.1ProteinID:BAF06643.2ProteinID:BAF09676.1ProteinID:BAF10697.1
ProteinID:BAF15578.1ProteinID:BAF17683.1ProteinID:BAF17700.1ProteinID:BAF25159.1ProteinID:BAF25792.1ProteinID:BAF27093.1
ProteinID:BAH93978.1ProteinID:BAS75107.1ProteinID:BAS80323.1ProteinID:BAS82016.1ProteinID:BAS90673.1ProteinID:BAS94424.1
ProteinID:BAS94452.1ProteinID:BAT02038.1ProteinID:BAT08228.1ProteinID:BAT09322.1ProteinID:BAT11849.1ProteinID:CAD41377.2
InterPro:CENP-T/H4_CProteinID:EAZ14069.1ProteinID:EAZ16833.1ProteinID:EAZ24208.1ProteinID:EAZ25381.1ProteinID:EAZ31763.1
ProteinID:EAZ40221.1ProteinID:EAZ45602.1ProteinID:EEE64000.1ProteinID:EEE69764.1GO:GO:0000786GO:GO:0000788
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005694GO:GO:0005730GO:GO:0005737
GO:GO:0005773GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0006334GO:GO:0006950
GO:GO:0008150GO:GO:0009414GO:GO:0009506GO:GO:0009507GO:GO:0009536GO:GO:0009579
GO:GO:0009628GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0042393GO:GO:0046982
InterPro:Histone-foldInterPro:Histone_H4InterPro:Histone_H4_CSInterPro:IPR009072EnsemblPlantsGene:Os09g0433600EnsemblPlants:Os09t0433600-01
PFAM:PF15511PRINTS:PR00623ScanProsite:PS00047PANTHER:PTHR10484PANTHER:PTHR10484:SF160UniProt:Q7XUC9
SMART:SM00417SUPFAM:SSF47113UniParc:UPI0000000084RefSeq:XP_015610672.1RefSeq:XP_015612705.1RefSeq:XP_015612982.1
RefSeq:XP_015614455.1RefSeq:XP_015627403.1RefSeq:XP_015628561.1RefSeq:XP_015636819.1RefSeq:XP_015637997.1RefSeq:XP_015639309.1
RefSeq:XP_015645242.1SEG:seg::::
Description
Similar to Histone H4. (Os09t0433600-01)
Coordinates
chr9:+:15916011..15916479
Molecular Weight (calculated)
11410.2 Da
IEP (calculated)
12.005
GRAVY (calculated)
-0.524
Length
103 amino acids
Sequence
(BLAST)
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.