Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G078900.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS3B01G167600.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS3B01G378900.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS4B01G350700.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS5B01G215500.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS5B01G301800.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS5B01G348900.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS5B01G349000.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS5B01G349100.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS5B01G349900.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS5B01G356200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G074000.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G078200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G078400.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G078600.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS4B01G225000.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G079000.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G079200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G081600.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G081900.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G082800.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G084100.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G084300.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G100200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G288000.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G404400.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS7B01G334600.1 | Wheat | nucleus | 99.03 | 99.03 |
| Zm00001d020585_P001 | Maize | nucleus | 99.03 | 99.03 |
| Zm00001d042954_P001 | Maize | nucleus | 99.03 | 99.03 |
| TraesCS2B01G492400.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G097900.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G221600.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G297100.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G297200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G300800.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G300900.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G301000.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G301100.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G304700.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G376200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G376400.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G376600.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G378500.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS1B01G380200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS2B01G411600.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS2B01G435100.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS2B01G435200.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS2B01G436500.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS2B01G492300.1 | Wheat | nucleus | 99.03 | 99.03 |
| TraesCS6B01G072500.1 | Wheat | nucleus | 98.06 | 98.06 |
| TraesCS2D01G413100.1 | Wheat | extracellular, golgi, nucleus | 98.06 | 98.06 |
| TraesCS1B01G376100.1 | Wheat | nucleus | 98.06 | 98.06 |
| TraesCS4B01G350800.1 | Wheat | nucleus | 97.09 | 97.09 |
| TraesCS2B01G436600.1 | Wheat | nucleus | 97.09 | 96.15 |
| TraesCS5A01G216600.1 | Wheat | nucleus | 96.12 | 96.12 |
| TraesCS6B01G073100.1 | Wheat | nucleus | 94.17 | 94.17 |
| TraesCS7A01G434500.1 | Wheat | nucleus | 94.17 | 94.17 |
| KRG98309 | Soybean | nucleus | 86.41 | 91.75 |
| TraesCS2B01G230100.1 | Wheat | nucleus | 85.44 | 85.44 |
| Os05t0462900-00 | Rice | nucleus | 67.96 | 70.71 |
| CDY06269 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 76.7 | 70.54 |
| GSMUA_Achr3P13890_001 | Banana | cytosol, nucleus, plastid, vacuole | 52.43 | 54.0 |
| KRH05416 | Soybean | nucleus | 38.84 | 48.78 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | InterPro:CENP-T/H4_C | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H4 | InterPro:Histone_H4_CS | InterPro:IPR009072 | PFAM:PF15511 | PRINTS:PR00623 |
| ScanProsite:PS00047 | PANTHER:PTHR10484 | PANTHER:PTHR10484:SF160 | SMART:SM00417 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS2B01G436700 |
| EnsemblPlants:TraesCS2B01G436700.1 | TIGR:cd00076 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2B:+:628157056..628157569
Molecular Weight (calculated)
11367.1 Da
IEP (calculated)
11.898
GRAVY (calculated)
-0.444
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.