CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15777	Canola	nucleus	71.43	77.67
Zm00001d042954_P001	Maize	nucleus	71.43	77.67
Zm00001d020585_P001	Maize	nucleus	71.43	77.67
CDY70247	Canola	nucleus	71.43	77.67
CDY60565	Canola	nucleus	71.43	77.67
CDY58832	Canola	nucleus	71.43	77.67
CDY56098	Canola	nucleus	71.43	77.67
CDY32809	Canola	nucleus	71.43	77.67
CDY31726	Canola	nucleus	71.43	77.67
CDY22719	Canola	nucleus	71.43	77.67
CDY18434	Canola	nucleus	71.43	77.67
CDX71081	Canola	nucleus	71.43	77.67
CDY07783	Canola	nucleus	71.43	77.67
CDY06280	Canola	nucleus	71.43	77.67
CDY04583	Canola	nucleus	71.43	77.67
CDX95760	Canola	nucleus	71.43	77.67
CDX74951	Canola	nucleus	71.43	77.67
CDX77204	Canola	nucleus	71.43	77.67
CDX78198	Canola	nucleus	71.43	77.67
CDX79740	Canola	nucleus	71.43	77.67
CDX83302	Canola	nucleus	71.43	77.67
CDX86050	Canola	nucleus	71.43	77.67
CDX88290	Canola	nucleus	71.43	77.67
CDX88717	Canola	nucleus	71.43	77.67
CDX93616	Canola	nucleus	71.43	77.67
CDX93630	Canola	nucleus	71.43	77.67
CDX95121	Canola	nucleus	71.43	77.67
CDX99135	Canola	nucleus	71.43	77.67
TraesCS2B01G436700.1	Wheat	nucleus	70.54	76.7
TraesCS2D01G413100.1	Wheat	extracellular, golgi, nucleus	70.54	76.7
KRG98309	Soybean	nucleus	65.18	75.26
HORVU1Hr1G070700.1	Barley	nucleus, plastid	71.43	62.02
Os05t0462900-00	Rice	nucleus	54.46	61.62
GSMUA_Achr3P13890_001	Banana	cytosol, nucleus, plastid, vacuole	47.32	53.0
TraesCS1A01G403600.1	Wheat	nucleus	47.32	51.46
CDX71090	Canola	nucleus	15.18	42.5

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	GO:A0A078F091	EnsemblPlants:CDY06269	ProteinID:CDY06269	ProteinID:CDY06269.1
InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
EnsemblPlantsGene:GSBRNA2T00122188001	InterPro:Histone-fold	InterPro:Histone_H4	InterPro:IPR009072	PFAM:PF15511	PRINTS:PR00623
PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	UniParc:UPI0004EE1C0E	:

Description

BnaA09g49340D

Coordinates

chrLK031968:-:568565..569194

Molecular Weight (calculated)

12940.9 Da

IEP (calculated)

10.640

GRAVY (calculated)

-0.174

Length

112 amino acids

Sequence
(BLAST)

001: MKTETKQCYY LFFCRLSISI TSNQFYYIVY LRGDNIQGIT KPAIRRLARR GGVKRISGLI YEETRGVLKI FLENVIRGAV TYTEHARRKT VTAMDVVYAL
101: KRQGRTLYGF GG

Best Arabidopsis Sequence Match ( AT1G07660.1 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.