CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99135	Canola	nucleus	100.0	100.0
TraesCS6B01G081600.1	Wheat	nucleus	100.0	100.0
TraesCS5D01G354100.1	Wheat	nucleus	100.0	100.0
KRH30347	Soybean	nucleus	100.0	100.0
CDY70247	Canola	nucleus	100.0	100.0
CDY60565	Canola	nucleus	100.0	100.0
CDY58832	Canola	nucleus	100.0	100.0
CDY56098	Canola	nucleus	100.0	100.0
CDY32809	Canola	nucleus	100.0	100.0
CDY31726	Canola	nucleus	100.0	100.0
CDY22719	Canola	nucleus	100.0	100.0
CDY18434	Canola	nucleus	100.0	100.0
CDY15777	Canola	nucleus	100.0	100.0
CDY06280	Canola	nucleus	100.0	100.0
CDY04583	Canola	nucleus	100.0	100.0
AT3G45930.1	Thale cress	nucleus	100.0	100.0
CDX95760	Canola	nucleus	100.0	100.0
CDX95121	Canola	nucleus	100.0	100.0
CDX93630	Canola	nucleus	100.0	100.0
CDX93616	Canola	nucleus	100.0	100.0
CDX88717	Canola	nucleus	100.0	100.0
CDX88290	Canola	nucleus	100.0	100.0
CDX86050	Canola	nucleus	100.0	100.0
CDX83302	Canola	nucleus	100.0	100.0
CDX79740	Canola	nucleus	100.0	100.0
CDX78198	Canola	nucleus	100.0	100.0
CDX77204	Canola	nucleus	100.0	100.0
CDX74951	Canola	nucleus	100.0	100.0
CDX71081	Canola	nucleus	100.0	100.0
CDX71090	Canola	nucleus	36.89	95.0
CDY06269	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.67	71.43

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	GO:A0A078H5R4	UniProt:A0A078H5R4	EnsemblPlants:CDY07783	ProteinID:CDY07783
ProteinID:CDY07783.1	ProteinID:CDY15777.1	ProteinID:CDY18434.1	ProteinID:CDY22719.1	ProteinID:CDY31726.1	ProteinID:CDY32809.1
ProteinID:CDY56098.1	ProteinID:CDY58832.1	ProteinID:CDY60565.1	ProteinID:CDY70247.1	InterPro:CENP-T/H4_C	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005730	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0005886	GO:GO:0006334	GO:GO:0006950
GO:GO:0008150	GO:GO:0009414	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00124917001
InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	PFAM:PF15511	PRINTS:PR00623
ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	UniParc:UPI0000000084
SEG:seg	:	:	:	:	:

Description

BnaA03g17280DHistone H4 [Source:UniProtKB/TrEMBL;Acc:A0A078H5R4]

Coordinates

chrLK031980:+:947759..948245

Molecular Weight (calculated)

11410.2 Da

IEP (calculated)

12.005

GRAVY (calculated)

-0.524

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Best Arabidopsis Sequence Match ( AT1G07660.1 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.