Factsheet for TraesCS3B01G378900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

golgi: 23128297
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

gfp, msms PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G078900.1	Wheat	nucleus	100.0	100.0
TraesCS4B01G225000.1	Wheat	nucleus	100.0	100.0
Bra000481.1-P	Field mustard	nucleus	100.0	100.0
TraesCS5B01G215500.1	Wheat	nucleus	100.0	100.0
TraesCS5B01G301800.1	Wheat	nucleus	100.0	100.0
TraesCS5B01G348900.1	Wheat	nucleus	100.0	100.0
TraesCS5B01G349000.1	Wheat	nucleus	100.0	100.0
TraesCS5B01G349100.1	Wheat	nucleus	100.0	100.0
TraesCS5B01G349900.1	Wheat	nucleus	100.0	100.0
TraesCS5B01G356200.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G074000.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G078200.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G078400.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G078600.1	Wheat	nucleus	100.0	100.0
TraesCS4B01G350700.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G079000.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G079200.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G081600.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G081900.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G082800.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G084100.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G084300.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G100200.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G288000.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G404400.1	Wheat	nucleus	100.0	100.0
TraesCS7B01G334600.1	Wheat	nucleus	100.0	100.0
TraesCS7D01G181000.1	Wheat	nucleus	100.0	100.0
VIT_06s0004g03890.t01	Wine grape	nucleus	100.0	100.0
TraesCS1B01G376600.1	Wheat	nucleus	100.0	100.0
CDY15777	Canola	nucleus	100.0	100.0
HORVU6Hr1G011710.1	Barley	nucleus	100.0	100.0
TraesCS1B01G097900.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G221600.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G297100.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G297200.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G300800.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G300900.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G301000.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G301100.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G304700.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G376200.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G376400.1	Wheat	nucleus	100.0	100.0
TraesCS3B01G167600.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G378500.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G380200.1	Wheat	nucleus	100.0	100.0
TraesCS2B01G411600.1	Wheat	nucleus	100.0	100.0
TraesCS2B01G435100.1	Wheat	nucleus	100.0	100.0
TraesCS2B01G435200.1	Wheat	nucleus	100.0	100.0
TraesCS2B01G436500.1	Wheat	nucleus	100.0	100.0
TraesCS2B01G492300.1	Wheat	nucleus	100.0	100.0
TraesCS2B01G492400.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G376100.1	Wheat	nucleus	99.03	99.03
TraesCS6B01G072500.1	Wheat	nucleus	99.03	99.03
TraesCS2B01G436700.1	Wheat	nucleus	99.03	99.03
TraesCS4B01G350800.1	Wheat	nucleus	98.06	98.06
TraesCS2B01G436600.1	Wheat	nucleus	98.06	97.12
TraesCS6B01G073100.1	Wheat	nucleus	94.17	94.17
TraesCS2B01G230100.1	Wheat	nucleus	86.41	86.41

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	PFAM:PF15511	PRINTS:PR00623
ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	EnsemblPlantsGene:TraesCS3B01G378900
EnsemblPlants:TraesCS3B01G378900.1	TIGR:cd00076	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:+:596965455..596966099

Molecular Weight (calculated)

11410.2 Da

IEP (calculated)

12.005

GRAVY (calculated)

-0.524

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.