Factsheet for AT3G53730.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G07820.1	Thale cress	nucleus	100.0	100.0
Zm00001d051478_P001	Maize	nucleus	100.0	100.0
TraesCSU01G142200.1	Wheat	nucleus	100.0	100.0
TraesCSU01G121000.1	Wheat	nucleus	100.0	100.0
TraesCS2D01G413300.1	Wheat	nucleus	100.0	100.0
TraesCS1D01G290000.1	Wheat	nucleus	100.0	100.0
TraesCS1D01G286700.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G221600.1	Wheat	nucleus	100.0	100.0
TraesCS1A01G201300.1	Wheat	nucleus	100.0	100.0
Os09t0553100-00	Rice	nucleus	100.0	100.0
KRH24981	Soybean	nucleus	100.0	100.0
KRH10345	Soybean	nucleus	100.0	100.0
GSMUA_Achr1P07160_001	Banana	nucleus	100.0	100.0
GSMUA_Achr10P...	Banana	nucleus	100.0	100.0
EES12723	Sorghum	nucleus	100.0	100.0
CDX71081	Canola	nucleus	100.0	100.0
AT5G59970.1	Thale cress	nucleus	100.0	100.0
AT5G59690.1	Thale cress	nucleus	100.0	100.0
AT3G46320.1	Thale cress	nucleus	100.0	100.0
AT3G45930.1	Thale cress	nucleus	100.0	100.0
AT2G28740.1	Thale cress	nucleus	100.0	100.0
AT1G07660.1	Thale cress	nucleus	100.0	100.0
TraesCS7A01G178900.1	Wheat	nucleus	99.03	99.03
GSMUA_Achr10P...	Banana	nucleus	76.7	97.53
Bra018682.1-P	Field mustard	nucleus	96.12	96.12
HORVU2Hr1G093680.3	Barley	nucleus	100.0	83.06

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	EntrezGene:817423	EntrezGene:823736	EntrezGene:823777	EntrezGene:824540
EntrezGene:836090	EntrezGene:836119	EntrezGene:837279	EntrezGene:837297	UniProt:A0A178VF54	ProteinID:AAA32810.1
ProteinID:AAA32811.1	ProteinID:AAC79580.1	ProteinID:AAF75072.1	ProteinID:AAF75089.1	ProteinID:AAM15445.1	ProteinID:AEC08165.1
ProteinID:AED97220.1	ProteinID:AED97260.1	ProteinID:AEE28158.1	ProteinID:AEE28187.1	ProteinID:AEE28188.1	ProteinID:AEE78091.1
ProteinID:AEE78146.1	ProteinID:AEE79133.1	EMBL:AF325058	EMBL:AF334729	EMBL:AK175513	EMBL:AK175843
EMBL:AK176147	EMBL:AK228230	EMBL:AK229241	EMBL:AK317074	ProteinID:ANM70482.1	ArrayExpress:AT3G53730
EnsemblPlantsGene:AT3G53730	RefSeq:AT3G53730	TAIR:AT3G53730	RefSeq:AT3G53730-TAIR-G	EnsemblPlants:AT3G53730.1	TAIR:AT3G53730.1
EMBL:AY057609	EMBL:AY062717	EMBL:AY063857	EMBL:AY085175	EMBL:AY085495	EMBL:AY085965
EMBL:AY086185	EMBL:AY086789	EMBL:AY087061	EMBL:AY087188	EMBL:AY093353	EMBL:AY099675
EMBL:AY124836	EMBL:AY128855	EMBL:AY142651	ProteinID:BAB08365.1	ProteinID:BAB09507.1	EMBL:BT003931
EMBL:BT004744	EMBL:BT004970	EMBL:BT024546	ProteinID:CAB62023.1	ProteinID:CAB82817.1	ProteinID:CAB88335.1
InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0000788	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0005730	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829
GO:GO:0005886	GO:GO:0006334	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009506
GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0042393	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS
InterPro:IPR009072	RefSeq:NP_001332089.1	RefSeq:NP_180441.1	RefSeq:NP_190179.1	RefSeq:NP_190941.1	RefSeq:NP_563793.1
RefSeq:NP_563797.1	RefSeq:NP_568911.1	RefSeq:NP_568918.1	RefSeq:NP_850660.1	RefSeq:NP_850939.1	ProteinID:OAO92471.1
ProteinID:OAO95258.1	ProteinID:OAP04740.1	ProteinID:OAP04980.1	ProteinID:OAP08079.1	ProteinID:OAP15907.1	ProteinID:OAP16019.1
UniProt:P59259	PFAM:PF15511	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PRINTS:PR00623	ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	UniProt:Q6NR90	SMART:SM00417
SUPFAM:SSF47113	UniParc:UPI0000000084	SEG:seg	:	:	:

Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]

Coordinates

chr3:-:19912385..19913515

Molecular Weight (calculated)

11410.2 Da

IEP (calculated)

12.005

GRAVY (calculated)

-0.524

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.