CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G066960.1	Barley	nucleus	100.0	100.0
Zm00001d012439_P001	Maize	nucleus	100.0	100.0
TraesCS5B01G349100.1	Wheat	nucleus	100.0	100.0
TraesCS2A01G417600.1	Wheat	nucleus	100.0	100.0
Solyc11g066160.1.1	Tomato	nucleus	100.0	100.0
Os05t0462700-01	Rice	nucleus	100.0	100.0
OQU93370	Sorghum	nucleus	100.0	100.0
CDY56098	Canola	nucleus	100.0	100.0
EES18362	Sorghum	nucleus	100.0	100.0
EES12723	Sorghum	nucleus	100.0	100.0
EES01716	Sorghum	nucleus	100.0	100.0
EES00251	Sorghum	nucleus	100.0	100.0
EES00250	Sorghum	nucleus	100.0	100.0
EER96771	Sorghum	nucleus	100.0	100.0
EER95622	Sorghum	nucleus	100.0	100.0
OQU89898	Sorghum	plastid	100.0	55.38
OQU86251	Sorghum	nucleus	99.03	39.53

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	EntrezGene:8056567	EntrezGene:8056569	EntrezGene:8058810	EntrezGene:8060296
EntrezGene:8060440	EntrezGene:8061791	EntrezGene:8073205	EntrezGene:8074181	EntrezGene:8077977	EntrezGene:8078508
EntrezGene:8085439	UniProt:C5WTL6	InterPro:CENP-T/H4_C	ProteinID:EER95622.1	ProteinID:EER96771.1	ProteinID:EES00250.1
ProteinID:EES00251.1	ProteinID:EES01716.1	ProteinID:EES12723.1	ProteinID:EES18362.1	GO:GO:0000786	GO:GO:0000788
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005730	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0005886	GO:GO:0006334	GO:GO:0006950
GO:GO:0008150	GO:GO:0009414	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0042393	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	EnsemblPlants:OQU85624	ProteinID:OQU85624
ProteinID:OQU85624.1	ProteinID:OQU93370.1	PFAM:PF15511	PRINTS:PR00623	ScanProsite:PS00047	PANTHER:PTHR10484
PANTHER:PTHR10484:SF160	SMART:SM00417	EnsemblPlantsGene:SORBI_3004G279601	SUPFAM:SSF47113	UniParc:UPI0000000084	RefSeq:XP_002439932.1
RefSeq:XP_002448395.1	RefSeq:XP_002452743.1	RefSeq:XP_002455130.1	RefSeq:XP_002455131.1	RefSeq:XP_002456596.1	RefSeq:XP_002457286.1
RefSeq:XP_002460250.1	RefSeq:XP_002462803.1	RefSeq:XP_002465012.1	RefSeq:XP_002468624.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:62229760..62230592

Molecular Weight (calculated)

11410.2 Da

IEP (calculated)

12.005

GRAVY (calculated)

-0.524

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.