Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22892874
nucleus: 25464976 plastid: 26371478 unclear: 26455813 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22892874
doi
Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g011390.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc05g054610.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc06g005420.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc06g005430.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc06g072240.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc06g075830.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc06g075850.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc06g075930.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc06g075960.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| Solyc11g066160.1.1 | Tomato | nucleus | 99.03 | 99.03 |
| Solyc11g072840.1.1 | Tomato | nucleus | 98.06 | 98.06 |
| TraesCS4B01G350800.1 | Wheat | nucleus | 97.09 | 97.09 |
| KRH05033 | Soybean | endoplasmic reticulum | 97.09 | 97.09 |
| TraesCS2B01G230100.1 | Wheat | nucleus | 86.41 | 86.41 |
| TraesCS2A01G203000.1 | Wheat | nucleus | 85.44 | 86.27 |
| TraesCS2D01G212700.1 | Wheat | nucleus | 85.44 | 85.44 |
| HORVU2Hr1G040050.1 | Barley | nucleus | 80.58 | 80.58 |
| Solyc09g007590.1.1 | Tomato | nucleus | 48.54 | 72.46 |
| Solyc09g007610.1.1 | Tomato | nucleus | 47.57 | 71.01 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | InterPro:CENP-T/H4_C | GO:GO:0000786 | GO:GO:0000788 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0042393 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H4 | InterPro:Histone_H4_CS |
| InterPro:IPR009072 | UniProt:P35057 | PFAM:PF15511 | PRINTS:PR00623 | ScanProsite:PS00047 | PANTHER:PTHR10484 |
| PANTHER:PTHR10484:SF160 | SMART:SM00417 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc11g072860.1 | EnsemblPlants:Solyc11g072860.1.1 | UniParc:UPI0000000B3C |
| EMBL:X69179 | EMBL:X69180 | SEG:seg | : | : | : |
Description
Histone H4 [Source:UniProtKB/Swiss-Prot;Acc:P35057]
Coordinates
chr11:+:56043849..56044160
Molecular Weight (calculated)
11426.2 Da
IEP (calculated)
12.005
GRAVY (calculated)
-0.550
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDS VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.