Factsheet for TraesCS2D01G212700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G203000.1	Wheat	nucleus	96.12	97.06
TraesCS2B01G230100.1	Wheat	nucleus	96.12	96.12
TraesCS4D01G345400.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G290000.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G290100.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G364400.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G366500.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G368000.1	Wheat	nucleus	85.44	85.44
TraesCS2D01G391500.1	Wheat	nucleus	85.44	85.44
TraesCS2D01G413300.1	Wheat	nucleus	85.44	85.44
TraesCS2D01G414900.1	Wheat	nucleus	85.44	85.44
TraesCS3D01G150200.1	Wheat	nucleus	85.44	85.44
TraesCS3D01G340800.1	Wheat	nucleus	85.44	85.44
TraesCS3D01G348200.1	Wheat	nucleus	85.44	85.44
TraesCS4D01G225600.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G290200.1	Wheat	nucleus	85.44	85.44
TraesCS5D01G224000.1	Wheat	nucleus	85.44	85.44
TraesCS5D01G224700.1	Wheat	nucleus	85.44	85.44
TraesCS5D01G308500.1	Wheat	nucleus	85.44	85.44
TraesCS5D01G354100.1	Wheat	nucleus	85.44	85.44
TraesCS5D01G354200.1	Wheat	nucleus	85.44	85.44
TraesCS5D01G354700.1	Wheat	nucleus	85.44	85.44
TraesCS5D01G360900.1	Wheat	nucleus	85.44	85.44
TraesCS6D01G061700.1	Wheat	nucleus	85.44	85.44
TraesCS6D01G062100.1	Wheat	nucleus	85.44	85.44
TraesCS6D01G062900.1	Wheat	nucleus	85.44	85.44
TraesCS6D01G063300.1	Wheat	nucleus	85.44	85.44
TraesCS6D01G241500.1	Wheat	nucleus	85.44	85.44
TraesCS7D01G181000.1	Wheat	nucleus	85.44	85.44
PGSC0003DMT400071314	Potato	nucleus	85.44	85.44
Solyc06g005430.1.1	Tomato	nucleus	85.44	85.44
Solyc06g005420.1.1	Tomato	nucleus	85.44	85.44
Solyc05g054610.1.1	Tomato	nucleus	85.44	85.44
Solyc04g011390.1.1	Tomato	nucleus	85.44	85.44
PGSC0003DMT400097008	Potato	nucleus	85.44	85.44
PGSC0003DMT400078156	Potato	nucleus	85.44	85.44
PGSC0003DMT400078155	Potato	nucleus	85.44	85.44
PGSC0003DMT400078154	Potato	nucleus	85.44	85.44
Solyc06g072240.1.1	Tomato	nucleus	85.44	85.44
PGSC0003DMT400060472	Potato	nucleus	85.44	85.44
PGSC0003DMT400060471	Potato	nucleus	85.44	85.44
PGSC0003DMT400040182	Potato	nucleus	85.44	85.44
PGSC0003DMT400040121	Potato	nucleus	85.44	85.44
PGSC0003DMT400022438	Potato	nucleus	85.44	85.44
PGSC0003DMT400007674	Potato	nucleus	85.44	85.44
KRH05033	Soybean	endoplasmic reticulum	85.44	85.44
TraesCS1D01G286700.1	Wheat	nucleus	85.44	85.44
Solyc06g075830.1.1	Tomato	nucleus	85.44	85.44
Solyc06g075850.1.1	Tomato	nucleus	85.44	85.44
Solyc06g075930.1.1	Tomato	nucleus	85.44	85.44
Solyc06g075960.1.1	Tomato	nucleus	85.44	85.44
Solyc11g072840.1.1	Tomato	nucleus	85.44	85.44
Solyc11g072860.1.1	Tomato	nucleus	85.44	85.44
TraesCS1D01G081600.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G204700.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G262000.1	Wheat	nucleus	85.44	85.44
TraesCS1D01G286600.1	Wheat	nucleus	85.44	85.44
TraesCS2D01G415000.1	Wheat	nucleus	68.93	84.52
TraesCS2D01G413200.1	Wheat	nucleus	84.47	84.47
TraesCS2D01G413100.1	Wheat	extracellular, golgi, nucleus	84.47	84.47
TraesCS2D01G469600.1	Wheat	nucleus	79.61	82.83
HORVU2Hr1G040050.1	Barley	nucleus	82.52	82.52

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	PFAM:PF15511	PRINTS:PR00623
ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	EnsemblPlantsGene:TraesCS2D01G212700
EnsemblPlants:TraesCS2D01G212700.1	TIGR:cd00076	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:171444524..171444835

Molecular Weight (calculated)

11416.3 Da

IEP (calculated)

12.123

GRAVY (calculated)

-0.306

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGAKG LGKGGAKRHR KILRDNIEGI TKPAIRRLAR RGGVKRIAGM VYAETRGVLH IFLEEVIRDV VAYTQHARRK TVTAMDVVFA LKRQGRTLYG
101: FGV

Best Arabidopsis Sequence Match ( AT1G07660.1 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.