CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24981	Soybean	nucleus	100.0	100.0
VIT_06s0004g04370.t01	Wine grape	nucleus	100.0	100.0
TraesCS7B01G334600.1	Wheat	nucleus	100.0	100.0
Solyc11g066160.1.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400001072	Potato	nucleus	100.0	100.0
Os07t0549900-00	Rice	nucleus	100.0	100.0
KRH72633	Soybean	nucleus	100.0	100.0
KRH67535	Soybean	nucleus	100.0	100.0
KRH30348	Soybean	nucleus	100.0	100.0
KRH30347	Soybean	nucleus	100.0	100.0
KRH30345	Soybean	nucleus	100.0	100.0
KRH30344	Soybean	nucleus	100.0	100.0
KRH19969	Soybean	nucleus	100.0	100.0
KRH16996	Soybean	nucleus	100.0	100.0
KRH10345	Soybean	nucleus	100.0	100.0
KRH02870	Soybean	nucleus	100.0	100.0
KRG98308	Soybean	nucleus	100.0	100.0
KRG90333	Soybean	nucleus	100.0	100.0
KRG88688	Soybean	nucleus	100.0	100.0
KRH05033	Soybean	endoplasmic reticulum	97.09	97.09
KRG98309	Soybean	nucleus	86.41	91.75
KRH32592	Soybean	nucleus	91.26	91.26
HORVU6Hr1G011540.1	Barley	nucleus, plastid	100.0	82.4
KRG95810	Soybean	nucleus	100.0	66.03
KRH05416	Soybean	nucleus	38.84	48.78

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100305586	EntrezGene:100777359	EntrezGene:100778317	EntrezGene:100779597	EntrezGene:100784085
EntrezGene:100784197	EntrezGene:100788767	EntrezGene:100793106	EntrezGene:100799680	EntrezGene:100800769	EntrezGene:100805597
EntrezGene:100818211	EntrezGene:100818748	EntrezGene:100819286	EntrezGene:100819422	MapMan:12.1.5	UniProt:B9MST3
EMBL:BT089260	EMBL:BT095742	InterPro:CENP-T/H4_C	EMBL:DQ371904	EnsemblPlantsGene:GLYMA_10G133500	GO:GO:0000786
GO:GO:0000788	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005730
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0005886	GO:GO:0006334
GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0042393
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	ProteinID:KRG88688.1
ProteinID:KRG90333.1	ProteinID:KRG98308.1	ProteinID:KRH02870.1	ProteinID:KRH10344.1	ProteinID:KRH10345.1	ProteinID:KRH16996.1
ProteinID:KRH19969.1	ProteinID:KRH24981.1	ProteinID:KRH30344.1	ProteinID:KRH30345.1	ProteinID:KRH30347.1	ProteinID:KRH30348.1
EnsemblPlants:KRH33582	ProteinID:KRH33582	ProteinID:KRH33582.1	ProteinID:KRH67535.1	ProteinID:KRH72633.1	UniProt:P0CG89
PFAM:PF15511	PRINTS:PR00623	ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417
SUPFAM:SSF47113	UniParc:UPI0000000084	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:35822510..35823417

Molecular Weight (calculated)

11410.2 Da

IEP (calculated)

12.005

GRAVY (calculated)

-0.524

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.