CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24981	Soybean	nucleus	66.03	100.0
Zm00001d021477_P001	Maize	nucleus	66.03	100.0
TraesCS7A01G434600.1	Wheat	nucleus	66.03	100.0
TraesCS3D01G348200.1	Wheat	nucleus	66.03	100.0
TraesCS3A01G347200.1	Wheat	nucleus	66.03	100.0
TraesCS2B01G435100.1	Wheat	nucleus	66.03	100.0
TraesCS2B01G411600.1	Wheat	nucleus	66.03	100.0
TraesCS1D01G290200.1	Wheat	nucleus	66.03	100.0
Solyc11g066160.1.1	Tomato	nucleus	66.03	100.0
KRH72633	Soybean	nucleus	66.03	100.0
KRH67535	Soybean	nucleus	66.03	100.0
KRH33582	Soybean	nucleus	66.03	100.0
KRH30348	Soybean	nucleus	66.03	100.0
KRH30347	Soybean	nucleus	66.03	100.0
KRH30345	Soybean	nucleus	66.03	100.0
KRH30344	Soybean	nucleus	66.03	100.0
KRH19969	Soybean	nucleus	66.03	100.0
CDX95760	Canola	nucleus	66.03	100.0
HORVU1Hr1G020040.1	Barley	nucleus	66.03	100.0
HORVU6Hr1G066400.1	Barley	nucleus	66.03	100.0
KRG88688	Soybean	nucleus	66.03	100.0
KRG90333	Soybean	nucleus	66.03	100.0
KRG98308	Soybean	nucleus	66.03	100.0
KRH02870	Soybean	nucleus	66.03	100.0
KRH10345	Soybean	nucleus	66.03	100.0
KRH16996	Soybean	nucleus	66.03	100.0
Bra031594.1-P	Field mustard	nucleus	66.03	100.0
KRH05033	Soybean	endoplasmic reticulum	64.1	97.09
KRG98309	Soybean	nucleus	57.05	91.75
KRH32592	Soybean	nucleus	60.26	91.26
HORVU6Hr1G029210.3	Barley	nucleus, plastid	67.95	77.94
HORVU6Hr1G013530.1	Barley	nucleus, plastid	67.31	70.0
KRH05416	Soybean	nucleus	25.64	48.78

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100779904	MapMan:12.1.5	UniProt:A0A0R0EX12	EMBL:ACUP02012138	InterPro:CENP-T/H4_C
EnsemblPlantsGene:GLYMA_19G172500	GO:GO:0000786	GO:GO:0000788	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042393
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	EnsemblPlants:KRG95810
ProteinID:KRG95810	ProteinID:KRG95810.1	PFAM:PF15511	PRINTS:PR00623	ScanProsite:PS00047	PANTHER:PTHR10484
PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	UniParc:UPI00023DD60D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:43331670..43332751

Molecular Weight (calculated)

17912.8 Da

IEP (calculated)

11.911

GRAVY (calculated)

-0.953

Length

156 amino acids

Sequence
(BLAST)

001: MNDPRRSSEW VDEKHKWHRF IKLALYNPPH RSVTFKTNSE RNSQNQNQKK RAKMSGRGKG GKGLGKGGAK RHRKVLRDNI QGITKPAIRR LARRGGVKRI
101: SGLIYEETRG VLKIFLENVI RDAVTYTEHA RRKTVTAMDV VYALKRQGRT LYGFGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.