CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30344	Soybean	nucleus	91.26	91.26
Zm00001d020584_P001	Maize	nucleus	91.26	91.26
TraesCS6D01G063300.1	Wheat	nucleus	91.26	91.26
TraesCS6A01G061600.1	Wheat	nucleus	91.26	91.26
TraesCS3A01G133900.1	Wheat	nucleus	91.26	91.26
TraesCS2B01G492300.1	Wheat	nucleus	91.26	91.26
TraesCS1B01G300800.1	Wheat	nucleus	91.26	91.26
Os10t0539500-01	Rice	extracellular, nucleus	91.26	91.26
KRH72633	Soybean	nucleus	91.26	91.26
KRH67535	Soybean	nucleus	91.26	91.26
KRH33582	Soybean	nucleus	91.26	91.26
KRH30348	Soybean	nucleus	91.26	91.26
KRH30347	Soybean	nucleus	91.26	91.26
KRH30345	Soybean	nucleus	91.26	91.26
AT1G07660.1	Thale cress	nucleus	91.26	91.26
KRG98308	Soybean	nucleus	91.26	91.26
Bra005185.1-P	Field mustard	nucleus	91.26	91.26
KRG88688	Soybean	nucleus	91.26	91.26
KRG90333	Soybean	nucleus	91.26	91.26
KRH24981	Soybean	nucleus	91.26	91.26
KRH02870	Soybean	nucleus	91.26	91.26
KRH10345	Soybean	nucleus	91.26	91.26
KRH16996	Soybean	nucleus	91.26	91.26
KRH19969	Soybean	nucleus	91.26	91.26
TraesCS6B01G072500.1	Wheat	nucleus	90.29	90.29
TraesCSU01G027600.1	Wheat	nucleus	90.29	90.29
KRH05033	Soybean	endoplasmic reticulum	88.35	88.35
HORVU7Hr1G114720.1	Barley	nucleus	85.44	85.44
HORVU7Hr1G114740.1	Barley	nucleus	85.44	84.62
KRG98309	Soybean	nucleus	79.61	84.54
KRG95810	Soybean	nucleus	91.26	60.26
KRH05416	Soybean	nucleus	36.89	46.34

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100793507	MapMan:12.1.5	EMBL:ACUP02006136	InterPro:CENP-T/H4_C	EnsemblPlantsGene:GLYMA_10G062400
GO:GO:0000786	GO:GO:0000788	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005730	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0005886
GO:GO:0006334	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009506	GO:GO:0009507
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0042393	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	UniProt:I1L934
InterPro:IPR009072	EnsemblPlants:KRH32592	ProteinID:KRH32592	ProteinID:KRH32592.1	PFAM:PF15511	PRINTS:PR00623
ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	UniParc:UPI000233C7AB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:5870029..5870340

Molecular Weight (calculated)

11376.3 Da

IEP (calculated)

11.787

GRAVY (calculated)

-0.354

Length

103 amino acids

Sequence
(BLAST)

001: MPGRGKGGKG LGKGGAKRHR KVLRNNIQGI TKPAIRCLAR RGGVKRISGL IYEETRGILK IFLENVIRDA VTYTEHARRK IVIAMDVVYA LKRQGKTLYG
101: FGG

Best Arabidopsis Sequence Match ( AT1G07660.1 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.