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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G364400.1 Wheat nucleus 100.0 100.0
VIT_13s0067g03650.t01 Wine grape nucleus 100.0 100.0
VIT_13s0019g00800.t01 Wine grape nucleus 100.0 100.0
VIT_13s0019g00780.t01 Wine grape nucleus 100.0 100.0
VIT_13s0019g00760.t01 Wine grape nucleus 100.0 100.0
VIT_08s0007g00040.t01 Wine grape nucleus 100.0 100.0
VIT_06s0004g03890.t01 Wine grape nucleus 100.0 100.0
TraesCS7B01G334600.1 Wheat nucleus 100.0 100.0
TraesCS5D01G308500.1 Wheat nucleus 100.0 100.0
Bra006699.1-P Field mustard nucleus 100.0 100.0
TraesCS1A01G360100.1 Wheat nucleus 100.0 100.0
TraesCS1A01G287700.1 Wheat nucleus 100.0 100.0
PGSC0003DMT400001072 Potato nucleus 100.0 100.0
Os07t0549900-00 Rice nucleus 100.0 100.0
KRH33582 Soybean nucleus 100.0 100.0
CDY70247 Canola nucleus 100.0 100.0
HORVU6Hr1G011540.1 Barley nucleus, plastid 100.0 82.4
Protein Annotations
Gene3D:1.10.20.10EntrezGene:100244527wikigene:100244527EntrezGene:100246791wikigene:100246791EntrezGene:100261486
wikigene:100261486EntrezGene:100263191wikigene:100263191EntrezGene:100265646wikigene:100265646EntrezGene:100266695
wikigene:100266695EntrezGene:100267358wikigene:100267358MapMan:12.1.5UniProt:A5B4J3EMBL:AM446335
EMBL:AM457052EMBL:AM468291EMBL:AM469706EMBL:AM479396EMBL:AM480081EMBL:AM482470
EMBL:AM483962EMBL:AM489098ProteinID:CAN59705ProteinID:CAN59705.1ProteinID:CAN59706ProteinID:CAN59706.1
ProteinID:CAN63143ProteinID:CAN63143.1ProteinID:CAN63421ProteinID:CAN63421.1ProteinID:CAN64268ProteinID:CAN64268.1
ProteinID:CAN68239ProteinID:CAN68239.1ProteinID:CAN79580ProteinID:CAN79580.1ProteinID:CAN79581ProteinID:CAN79581.1
ProteinID:CAN79612ProteinID:CAN79612.1ProteinID:CAN79680ProteinID:CAN79680.1ProteinID:CAN83554ProteinID:CAN83554.1
ProteinID:CCB43591ProteinID:CCB43591.1ProteinID:CCB43617ProteinID:CCB43617.1ProteinID:CCB49758ProteinID:CCB49758.1
ProteinID:CCB55608ProteinID:CCB55608.1ProteinID:CCB56365ProteinID:CCB56365.1ProteinID:CCB56366ProteinID:CCB56366.1
ProteinID:CCB56367ProteinID:CCB56367.1InterPro:CENP-T/H4_CEMBL:FN594951EMBL:FN595514EMBL:FN595991
EMBL:FN595998GO:GO:0000786GO:GO:0000788GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005694GO:GO:0006334GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0042393
GO:GO:0046982InterPro:Histone-foldInterPro:Histone_H4InterPro:Histone_H4_CSInterPro:IPR009072EntrezGene:LOC100244527
wikigene:LOC100244527EntrezGene:LOC100246791wikigene:LOC100246791EntrezGene:LOC100261486wikigene:LOC100261486EntrezGene:LOC100263191
wikigene:LOC100263191EntrezGene:LOC100265646wikigene:LOC100265646EntrezGene:LOC100266695wikigene:LOC100266695EntrezGene:LOC100267358
wikigene:LOC100267358PFAM:PF15511PRINTS:PR00623ScanProsite:PS00047PANTHER:PTHR10484PANTHER:PTHR10484:SF160
SMART:SM00417SUPFAM:SSF47113TIGR:TC64899UniParc:UPI0000000084ArrayExpress:VIT_06s0004g04370EnsemblPlantsGene:VIT_06s0004g04370
EnsemblPlants:VIT_06s0004g04370.t01unigene:Vvi.13551RefSeq:XP_002262845.1RefSeq:XP_002281789.1RefSeq:XP_002284158RefSeq:XP_002284158.1
RefSeq:XP_002284564.1RefSeq:XP_019080189.1SEG:seg:::
Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A5B4J3]
Coordinates
chr6:-:5352023..5352367
Molecular Weight (calculated)
11410.2 Da
IEP (calculated)
12.005
GRAVY (calculated)
-0.524
Length
103 amino acids
Sequence
(BLAST)
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
Best Arabidopsis Sequence Match ( AT1G07660.1 )
(BLAST)
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.