Factsheet for VIT_08s0007g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15777	Canola	nucleus	100.0	100.0
EES01716	Sorghum	nucleus	100.0	100.0
KRH72633	Soybean	nucleus	100.0	100.0
Os03t0119900-01	Rice	nucleus	100.0	100.0
TraesCS1B01G380200.1	Wheat	nucleus	100.0	100.0
TraesCS3D01G340800.1	Wheat	nucleus	100.0	100.0
TraesCS5A01G348500.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G074000.1	Wheat	nucleus	100.0	100.0
VIT_06s0004g03890.t01	Wine grape	nucleus	100.0	100.0
VIT_06s0004g04370.t01	Wine grape	nucleus	100.0	100.0
VIT_13s0019g00760.t01	Wine grape	nucleus	100.0	100.0
VIT_13s0019g00780.t01	Wine grape	nucleus	100.0	100.0
VIT_13s0019g00800.t01	Wine grape	nucleus	100.0	100.0
VIT_13s0067g03650.t01	Wine grape	nucleus	100.0	100.0
Zm00001d002546_P001	Maize	nucleus	100.0	100.0

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100244527	wikigene:100244527	EntrezGene:100246791	wikigene:100246791	EntrezGene:100261486
wikigene:100261486	EntrezGene:100263191	wikigene:100263191	EntrezGene:100265646	wikigene:100265646	EntrezGene:100266695
wikigene:100266695	EntrezGene:100267358	wikigene:100267358	MapMan:12.1.5	UniProt:A5B4J3	EMBL:AM446335
EMBL:AM457052	EMBL:AM468291	EMBL:AM469706	EMBL:AM479396	EMBL:AM480081	EMBL:AM482470
EMBL:AM483962	EMBL:AM489098	ProteinID:CAN59705	ProteinID:CAN59705.1	ProteinID:CAN59706	ProteinID:CAN59706.1
ProteinID:CAN63143	ProteinID:CAN63143.1	ProteinID:CAN63421	ProteinID:CAN63421.1	ProteinID:CAN64268	ProteinID:CAN64268.1
ProteinID:CAN68239	ProteinID:CAN68239.1	ProteinID:CAN79580	ProteinID:CAN79580.1	ProteinID:CAN79581	ProteinID:CAN79581.1
ProteinID:CAN79612	ProteinID:CAN79612.1	ProteinID:CAN79680	ProteinID:CAN79680.1	ProteinID:CAN83554	ProteinID:CAN83554.1
ProteinID:CCB43591	ProteinID:CCB43591.1	ProteinID:CCB43617	ProteinID:CCB43617.1	ProteinID:CCB49758	ProteinID:CCB49758.1
ProteinID:CCB55608	ProteinID:CCB55608.1	ProteinID:CCB56365	ProteinID:CCB56365.1	ProteinID:CCB56366	ProteinID:CCB56366.1
ProteinID:CCB56367	ProteinID:CCB56367.1	InterPro:CENP-T/H4_C	EMBL:FN594951	EMBL:FN595514	EMBL:FN595991
EMBL:FN595998	GO:GO:0000786	GO:GO:0000788	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042393
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	EntrezGene:LOC100244527
wikigene:LOC100244527	EntrezGene:LOC100246791	wikigene:LOC100246791	EntrezGene:LOC100261486	wikigene:LOC100261486	EntrezGene:LOC100263191
wikigene:LOC100263191	EntrezGene:LOC100265646	wikigene:LOC100265646	EntrezGene:LOC100266695	wikigene:LOC100266695	EntrezGene:LOC100267358
wikigene:LOC100267358	PFAM:PF15511	PRINTS:PR00623	ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160
SMART:SM00417	SUPFAM:SSF47113	TIGR:TC58791	UniParc:UPI0000000084	ArrayExpress:VIT_08s0007g00040	EnsemblPlantsGene:VIT_08s0007g00040
EnsemblPlants:VIT_08s0007g00040.t01	RefSeq:XP_002262845	RefSeq:XP_002262845.1	RefSeq:XP_002281789.1	RefSeq:XP_002284158.1	RefSeq:XP_002284564.1
RefSeq:XP_019080189.1	SEG:seg	:	:	:	:

Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A5B4J3]

Coordinates

chr8:-:14426480..14427042

Molecular Weight (calculated)

11410.2 Da

IEP (calculated)

12.005

GRAVY (calculated)

-0.524

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.