Factsheet for Zm00001d021422_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008669_P001	Maize	nucleus	73.72	98.06
Zm00001d051478_P001	Maize	nucleus	73.72	98.06
Zm00001d042954_P001	Maize	nucleus	73.72	98.06
Zm00001d039733_P001	Maize	nucleus	73.72	98.06
Zm00001d027394_P001	Maize	nucleus	73.72	98.06
Zm00001d026015_P001	Maize	nucleus	73.72	98.06
Zm00001d021477_P001	Maize	nucleus	73.72	98.06
Zm00001d020585_P001	Maize	nucleus	73.72	98.06
Zm00001d020584_P001	Maize	nucleus	73.72	98.06
Zm00001d012439_P001	Maize	nucleus	73.72	98.06
Zm00001d010575_P001	Maize	nucleus	73.72	98.06
Zm00001d005791_P001	Maize	nucleus	73.72	98.06
Zm00001d002546_P001	Maize	nucleus	73.72	98.06
Zm00001d002543_P001	Maize	nucleus	73.72	98.06
Solyc11g066160.1.1	Tomato	nucleus	73.72	98.06
Os02t0684500-00	Rice	nucleus	73.72	98.06
Bra030704.1-P	Field mustard	nucleus	72.26	96.12
TraesCS7A01G408100.1	Wheat	nucleus	61.31	81.55
HORVU3Hr1G023460.1	Barley	nucleus	77.37	75.71
HORVU4Hr1G063260.2	Barley	nucleus	75.18	74.1
HORVU2Hr1G097990.1	Barley	nucleus, plastid	77.37	69.74
HORVU4Hr1G023200.1	Barley	nucleus	75.18	62.8
Zm00001d013727_P001	Maize	cytosol, mitochondrion, nucleus	49.63	59.65
HORVU5Hr1G086620.4	Barley	nucleus	77.37	57.92
Zm00001d012668_P001	Maize	nucleus	48.18	54.1

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	UniProt:A0A1D6IAU4	InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005730	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0005886	GO:GO:0006334	GO:GO:0006950	GO:GO:0008150
GO:GO:0009414	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H4
InterPro:Histone_H4_CS	InterPro:IPR009072	ProteinID:ONM57091.1	PFAM:PF15511	PRINTS:PR00623	ScanProsite:PS00047
PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	UniParc:UPI0008435412	EnsemblPlantsGene:Zm00001d021422
EnsemblPlants:Zm00001d021422_P001	EnsemblPlants:Zm00001d021422_T001	SEG:seg	:	:	:

Description

Histone H4

Coordinates

chr7:+:151786254..151786667

Molecular Weight (calculated)

14959.3 Da

IEP (calculated)

11.922

GRAVY (calculated)

-0.550

Length

137 amino acids

Sequence
(BLAST)

001: MPAIPTSALV SSSHERNTIH PPVRSGGDRQ PAAEMSGRGK GGKGLGKGGA KRHRKVLRDN IQGITKPAIR RLARRGGVKR ISGLIYEETR GVLKIFLENV
101: IRDAVTYTEH ARRKTVTAMD VVYALKRQGR TLYGFGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.