Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G020040.1 | Barley | nucleus | 85.83 | 100.0 |
| TraesCS1D01G081600.1 | Wheat | nucleus | 85.83 | 100.0 |
| TraesCS1B01G376400.1 | Wheat | nucleus | 85.83 | 100.0 |
| TraesCS1B01G097900.1 | Wheat | nucleus | 85.83 | 100.0 |
| Solyc11g066160.1.1 | Tomato | nucleus | 85.83 | 100.0 |
| KRH30345 | Soybean | nucleus | 85.83 | 100.0 |
| HORVU6Hr1G066400.1 | Barley | nucleus | 85.83 | 100.0 |
| HORVU6Hr1G011710.1 | Barley | nucleus | 85.83 | 100.0 |
| HORVU2Hr1G098320.1 | Barley | nucleus | 85.83 | 100.0 |
| HORVU1Hr1G073680.1 | Barley | nucleus | 85.83 | 100.0 |
| HORVU1Hr1G020060.1 | Barley | nucleus | 85.83 | 100.0 |
| HORVU1Hr1G066960.1 | Barley | nucleus | 85.83 | 100.0 |
| HORVU1Hr1G022390.1 | Barley | nucleus | 85.83 | 100.0 |
| HORVU1Hr1G029090.2 | Barley | nucleus | 100.0 | 90.91 |
| HORVU7Hr1G114720.1 | Barley | nucleus | 77.5 | 90.29 |
| HORVU7Hr1G114740.1 | Barley | nucleus | 77.5 | 89.42 |
| HORVU2Hr1G093680.3 | Barley | nucleus | 90.83 | 87.9 |
| HORVU6Hr1G011540.1 | Barley | nucleus, plastid | 89.17 | 85.6 |
| HORVU3Hr1G088160.1 | Barley | nucleus | 90.0 | 84.38 |
| HORVU1Hr1G071760.1 | Barley | nucleus, plastid | 86.67 | 83.2 |
| HORVU6Hr1G011780.1 | Barley | nucleus | 86.67 | 82.54 |
| HORVU2Hr1G098340.4 | Barley | nucleus | 88.33 | 82.17 |
| HORVU1Hr1G017830.1 | Barley | nucleus | 86.67 | 81.89 |
| HORVU1Hr1G070700.1 | Barley | nucleus, plastid | 87.5 | 81.4 |
| HORVU1Hr1G079440.1 | Barley | nucleus, plastid | 88.33 | 80.92 |
| HORVU2Hr1G040050.1 | Barley | nucleus | 69.17 | 80.58 |
| HORVU5Hr1G086630.1 | Barley | nucleus | 85.0 | 79.07 |
| HORVU7Hr1G100410.1 | Barley | nucleus | 84.17 | 78.91 |
| HORVU1Hr1G071210.4 | Barley | nucleus | 86.67 | 78.2 |
| HORVU5Hr1G079130.1 | Barley | nucleus | 85.83 | 77.44 |
| HORVU7Hr1G043300.1 | Barley | nucleus | 88.33 | 76.81 |
| HORVU6Hr1G029210.3 | Barley | nucleus, plastid | 85.83 | 75.74 |
| HORVU3Hr1G023460.1 | Barley | nucleus | 85.83 | 73.57 |
| HORVU6Hr1G011510.1 | Barley | nucleus, plastid | 85.83 | 73.05 |
| HORVU4Hr1G063260.2 | Barley | nucleus | 84.17 | 72.66 |
| HORVU1Hr1G071190.2 | Barley | nucleus, plastid | 88.33 | 72.6 |
| HORVU1Hr1G052030.2 | Barley | nucleus, plastid | 87.5 | 69.54 |
| HORVU5Hr1G087870.1 | Barley | nucleus, plastid | 85.83 | 68.67 |
| HORVU6Hr1G013530.1 | Barley | nucleus, plastid | 85.83 | 68.67 |
| HORVU2Hr1G097990.1 | Barley | nucleus, plastid | 86.67 | 68.42 |
| HORVU5Hr1G087830.1 | Barley | nucleus | 88.33 | 62.72 |
| HORVU4Hr1G023200.1 | Barley | nucleus | 85.0 | 62.2 |
| HORVU2Hr1G106590.1 | Barley | nucleus, plastid | 69.17 | 58.45 |
| HORVU2Hr1G099490.1 | Barley | nucleus, plastid | 85.83 | 57.54 |
| HORVU6Hr1G011030.1 | Barley | nucleus | 55.0 | 55.93 |
| HORVU5Hr1G086620.4 | Barley | nucleus | 85.0 | 55.74 |
| HORVU1Hr1G090300.44 | Barley | nucleus | 88.33 | 54.92 |
| HORVU6Hr1G011020.1 | Barley | nucleus, plastid | 83.33 | 51.02 |
| HORVU1Hr1G080200.2 | Barley | plastid | 59.17 | 39.66 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | UniProt:A0A287M3W2 | InterPro:CENP-T/H4_C | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0046982 | EnsemblPlantsGene:HORVU3Hr1G087170 | EnsemblPlants:HORVU3Hr1G087170.1 | InterPro:Histone-fold | InterPro:Histone_H4 |
| InterPro:Histone_H4_CS | InterPro:IPR009072 | PFAM:PF15511 | PRINTS:PR00623 | ScanProsite:PS00047 | PANTHER:PTHR10484 |
| PANTHER:PTHR10484:SF160 | SMART:SM00417 | SUPFAM:SSF47113 | UniParc:UPI000B47A95A | SEG:seg | : |
Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A287M3W2]
Coordinates
chrchr3H:-:620109182..620110085
Molecular Weight (calculated)
13216.2 Da
IEP (calculated)
11.870
GRAVY (calculated)
-0.593
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: NPQIPPTHLP SHSEQAAMSG RGKGGKGLGK GGAKRHRKVL RDNIQGITKP AIRRLARRGG VKRISGLIYE ETRGVLKIFL ENVIRDAVTY TEHARRKTVT
101: AMDVVYALKR QGRTLYGFGG
101: AMDVVYALKR QGRTLYGFGG
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.