CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89488
KRG90984
KRG91493
KRG94254
KRG94519
KRG97770
KRH01504
KRH05834
KRH06950
KRH08713
KRH15184
KRH20017
KRH25124
KRH28995
KRH30550
KRH31114
KRH35335
KRH35769
KRH41052
KRH45195
KRH54085
KRH56424
KRH57679
KRH62487
KRH63871
KRH70316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	KRH28995	AT4G19210.1	20706207
AT1G20590.1	KRG91493	AT4G25550.1	20706207
AT1G20590.1	KRH35335	AT4G25550.1	20706207
AT1G20610.1	KRH05834	AT1G19520.1	20706207
AT1G20610.1	KRH15184	AT1G19520.1	20706207
AT1G20610.1	KRH08713	AT1G43700.1	20706207
AT1G20610.1	KRH70316	AT1G43700.1	20706207
AT1G20610.1	KRG90984	AT1G56290.1	20706207
AT1G20610.1	KRH35769	AT1G56290.1	20706207
AT1G20610.1	KRH56424	AT1G71380.1	20706207
AT1G20610.1	KRH62487	AT1G71380.1	20706207
AT1G20610.1	KRH25124	AT2G27960.1	20706207
AT1G20610.1	KRH30550	AT2G27960.1	20706207
AT1G20610.1	KRG89488	AT3G11270.1	20706207
AT1G20610.1	KRG97770	AT3G11270.1	20706207
AT1G20610.1	KRH31114	AT3G11270.1	20706207
AT1G20610.1	KRH20017	AT5G07300.1	20706207
AT1G20610.1	KRH41052	AT5G07300.1	20706207
AT1G20610.1	KRH54085	AT5G07300.1	20706207
AT1G20610.1	KRH63871	AT5G07300.1	20706207
AT1G20610.1	KRH01504	AT5G13330.1	20706207
AT1G20610.1	KRH45195	AT5G13330.1	20706207
AT1G20610.1	KRG94254	AT5G14170.1	20706207
AT1G20610.1	KRG94519	AT5G14170.1	20706207
AT1G20610.1	KRH06950	AT5G14170.1	20706207
AT1G20610.1	KRH57679	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51329	Soybean	nucleus, plastid	94.57	92.29
PGSC0003DMT400075380	Potato	nucleus	40.0	68.35
CDY31481	Canola	nucleus	35.56	66.36
GSMUA_Achr5P19270_001	Banana	cytosol	32.35	60.37
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	61.23	58.49
Solyc04g082430.2.1	Tomato	nucleus	56.05	57.76
CDX85942	Canola	nucleus	58.02	57.6
Bra003727.1-P	Field mustard	nucleus	53.83	56.92
CDY33634	Canola	nucleus	56.79	56.37
Bra016460.1-P	Field mustard	nucleus	56.79	56.1
Bra015762.1-P	Field mustard	nucleus	59.51	55.92
CDX96631	Canola	nucleus	56.54	55.85
CDX88261	Canola	nucleus	59.26	55.81
CDX68105	Canola	nucleus	54.32	55.7
CDX87612	Canola	nucleus	59.26	55.68
PGSC0003DMT400025854	Potato	nucleus	60.49	55.56
GSMUA_Achr11P...	Banana	nucleus	55.56	55.15
GSMUA_Achr8P13320_001	Banana	nucleus	57.04	55.0
KRH28901	Soybean	nucleus	58.52	54.73
AT1G20610.1	Thale cress	nucleus	57.78	54.55
KRH76553	Soybean	nucleus	58.02	54.4
Solyc12g094600.1.1	Tomato	nucleus	56.54	53.88
Os06t0726800-01	Rice	nucleus	54.81	52.98
GSMUA_Achr5P19110_001	Banana	nucleus	55.31	52.83
Bra025831.1-P	Field mustard	nucleus	53.09	52.44
AT1G76310.3	Thale cress	nucleus	58.77	51.85
CDY29520	Canola	nucleus	52.35	51.71
HORVU0Hr1G022770.1	Barley	nucleus, plastid	35.31	51.44
KXG20945	Sorghum	nucleus	53.83	51.42
TraesCS7D01G536000.1	Wheat	nucleus	53.09	51.31
TraesCS7B01G472800.1	Wheat	nucleus	53.09	51.31
HORVU7Hr1G121820.6	Barley	nucleus	53.09	51.19
TraesCS7A01G549500.1	Wheat	nucleus	52.59	50.84
Os04t0563700-01	Rice	mitochondrion	52.59	50.71
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	32.84	50.19
Zm00001d036360_P002	Maize	nucleus	52.35	50.0
TraesCS2B01G422800.1	Wheat	nucleus	50.12	49.63
TraesCS2A01G404800.1	Wheat	nucleus	49.63	49.63
TraesCS2D01G401700.1	Wheat	nucleus, plastid	50.86	48.93
Zm00001d026129_P001	Maize	nucleus	49.38	46.95
EES12664	Sorghum	nucleus	49.38	46.3
Zm00001d002662_P010	Maize	nucleus	48.64	43.3
HORVU2Hr1G096070.2	Barley	nucleus	49.38	42.46
KRH66720	Soybean	endoplasmic reticulum, vacuole	19.75	40.2
KRH52056	Soybean	nucleus	19.26	36.97
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	56.05	33.98
KRH66715	Soybean	nucleus	32.84	33.93
KRG95055	Soybean	nucleus	38.02	33.85
KRH66713	Soybean	nucleus	37.04	33.04
KRH73516	Soybean	nucleus	35.56	32.73
KRH14611	Soybean	nucleus	35.06	32.35
KRH66718	Soybean	plastid	29.63	32.17
KRG95056	Soybean	cytosol	29.88	31.27
KRH61375	Soybean	nucleus	23.7	29.36
KRH61371	Soybean	nucleus	25.19	29.23
KRH15427	Soybean	nucleus, plastid	25.93	28.85
KRH05614	Soybean	nucleus	25.19	27.79
KRH16044	Soybean	nucleus	31.11	27.33
KRH05060	Soybean	nucleus	30.37	26.8
KRH52055	Soybean	nucleus	23.21	26.26
KRH61850	Soybean	nucleus	31.6	26.23
KRH52524	Soybean	nucleus	30.12	26.01
KRH61373	Soybean	nucleus, plastid	23.95	25.87
KRH61369	Soybean	nucleus	20.49	25.38
KRH53279	Soybean	plastid	29.63	25.0
KRH44391	Soybean	nucleus	28.15	24.2
KRH64625	Soybean	plastid	28.89	24.17
KRH47513	Soybean	nucleus	28.4	24.16
KRH16410	Soybean	plastid	29.38	23.61
KRH17986	Soybean	plastid	29.14	23.46
KRH44849	Soybean	nucleus	34.57	18.89

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EMBL:ACUP02002135	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_04G001100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:K7KHB8	EnsemblPlants:KRH60628	ProteinID:KRH60628	ProteinID:KRH60628.1	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF336	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI0001BA8C5D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:101295..104020

Molecular Weight (calculated)

46767.6 Da

IEP (calculated)

4.840

GRAVY (calculated)

-0.215

Length

405 amino acids

Sequence
(BLAST)

001: MEGSKENCVP RIPLIPSSNL QGPRMKPLLH HRLPLGNISQ NVNMPHSQVN KLDLSRKCTA HTIQHHFPQE TKKQNLLAPN PSCKLDCDIV DIDDDDGDGS
101: DDAVPVFVKH TEAMLDEIDK IEEVEMEDVE EEPVLDIDAC DRKDPLAVVE YIDDIYSFYK DIENSSCVSP NYMTSQLDIN ERMRAILIDW LIEVHYKFEL
201: LEETLFLTVN LIDRFLERQA VIRNKLQLVG VTAMLIACKY EEVTVPTVED FILITDKAYT RNEVLDMEKL MMNILQFKLS MPTPYMFMRR FLKAAHSDKK
301: LELLSFFLVE LCLVECKMLK FSPSLLAAAA IYTAQCSLYQ FKQWTKTTEW YTDYSEEKLL ECSRLMVTFH QKAGSGKLTG VYRKYNTWKY GCAAKIEPAL
401: FLLDN

Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)

001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI

Arabidopsis Description

CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.