CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89488
KRG97770
KRH06014
KRH17547
KRH31114
KRH37522
KRH41811
KRH48128
KRH56424
KRH60516
KRH62487
KRH68073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	KRH56424	AT1G71380.1	20706207
AT5G11300.1	KRH62487	AT1G71380.1	20706207
AT5G11300.1	KRH06014	AT1G76540.1	12857813
AT5G11300.1	KRH17547	AT1G76540.1	12857813
AT5G11300.1	KRH37522	AT1G76540.1	12857813
AT5G11300.1	KRH48128	AT1G76540.1	12857813
AT5G11300.1	KRG89488	AT3G11270.1	20706207
AT5G11300.1	KRG97770	AT3G11270.1	20706207
AT5G11300.1	KRH31114	AT3G11270.1	20706207
AT5G11300.1	KRH41811	AT3G56150.1	20706207
AT5G11300.1	KRH60516	AT3G56150.1	20706207
AT5G11300.1	KRH68073	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61850	Soybean	nucleus	89.98	86.48
KRH16044	Soybean	nucleus	66.1	67.25
KRH05060	Soybean	nucleus	62.26	63.62
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	50.11	58.6
CDX97090	Canola	nucleus	49.47	53.21
CDX87087	Canola	plastid	46.91	52.76
AT5G11300.1	Thale cress	plastid	48.83	52.52
Bra008973.1-P	Field mustard	nucleus, plastid	48.61	52.17
CDX69768	Canola	nucleus, plastid	48.61	52.17
AT5G25380.4	Thale cress	plastid	49.25	52.14
Solyc06g065680.2.1	Tomato	nucleus, plastid	52.67	52.0
KRH52056	Soybean	nucleus	23.24	51.66
KRH47513	Soybean	nucleus	50.32	49.58
PGSC0003DMT400067117	Potato	plastid	51.17	48.29
KRH44391	Soybean	nucleus	48.4	48.2
KRH05614	Soybean	nucleus	35.18	44.96
KRH61375	Soybean	nucleus	31.34	44.95
KRH15427	Soybean	nucleus, plastid	34.33	44.23
KRH61371	Soybean	nucleus	31.34	42.12
KRH61369	Soybean	nucleus	28.78	41.28
KRH52055	Soybean	nucleus	30.92	40.5
KRH66720	Soybean	endoplasmic reticulum, vacuole	17.06	40.2
KRH61373	Soybean	nucleus, plastid	31.34	39.2
KRH64625	Soybean	plastid	37.53	36.36
KRH53279	Soybean	plastid	37.1	36.25
KRH17986	Soybean	plastid	36.25	33.8
KRH16410	Soybean	plastid	35.82	33.33
KRH60628	Soybean	nucleus	26.01	30.12
KRH51329	Soybean	nucleus, plastid	26.44	29.88
KRH14611	Soybean	nucleus	26.01	27.79
KRH73516	Soybean	nucleus	26.01	27.73
KRH66718	Soybean	plastid	21.75	27.35
KRH66715	Soybean	nucleus	22.81	27.3
KRH76553	Soybean	nucleus	24.73	26.85
KRH28901	Soybean	nucleus	24.31	26.33
KRG95055	Soybean	nucleus	24.95	25.71
KRH66713	Soybean	nucleus	24.52	25.33
KRG95056	Soybean	cytosol	20.04	24.29
Bra036544.1-P	Field mustard	nucleus	47.33	22.49
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	47.33	22.45
KRH44849	Soybean	nucleus	24.73	15.65

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100807750	MapMan:13.1.1.1.1	EMBL:ACUP02003423	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_06G072900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:K7KTL8	EnsemblPlants:KRH52524	ProteinID:KRH52524	ProteinID:KRH52524.1	ProteinID:KRH52525.1
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000233A454	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:5619958..5625774

Molecular Weight (calculated)

53101.0 Da

IEP (calculated)

8.838

GRAVY (calculated)

-0.326

Length

469 amino acids

Sequence
(BLAST)

001: MDKVNRVCAK DEERPLRITR ARARALRGIT PYSRPSLKNE QKNVLRAHPK RAASSENKTS VVVPAVVQQK GRAVLSDVSN MCAKPHDKCT KSSKFQAKGV
101: YTKKTTKLAA LGVSTEVSST QENVRAKLAE ELSTIRMVES KDTIREGVTA DTALSMQNSL KSDELQSSPN KDIHMIWEKL GASDSLTIVD IDSELKDSQV
201: WSSYAPDIYS NIQVTELQRK PVANYMDKLQ KDINPTMRGI LVDWLVEVSE EYKLVPDTLY LTVNLIDRYL STRLIQKQRL QLLGVTCMLI ASKYEEICAP
301: RVEEFCFITD NTYSKEEVLK MEREVLDLVH FQLSVPTIKT FLRRFIQAAQ SSYKAPCVEL EFLANYLAEL ALVECNFFQF LPSLVAASAV FLAKWTLNES
401: EHPWNPTLEH YTKYKASELK TVVLALQDLQ LNTKGSSLNA VPEKYKQQKF NCVANLSPKP VQSLFQDKV

Best Arabidopsis Sequence Match ( AT5G25380.1 )
(BLAST)

001: MHRASSKHTN AKKEAISTSK IRDNNVRVTR SRAKALGVSN SPSKPAFKHE TKRVARPSNK RMASDNITVC NQKRRAVLKD VTNTLAESII STEGNVKACK
101: RGGKETKQIE EDGLVDVDGE KSKLAEDLSK IRMVESLDAS ASKQKEDRSD VTDCVQIVDI DSGVQDPQFC SLYAASIYDS INVAELEQRP STSYMVQVQR
201: DIDPTMRGIL IDWLVEVSEE YKLVSDTLYL TVNLIDRFMS HNYIEKQKLQ LLGITCMLIA SKYEEISAPR LEEFCFITDN TYTRLEVLSM EIKVLNSLHF
301: RLSVPTTKTF LRRFIRAAQA SDKVPLIEME YLANYFAELT LTEYTFLRFL PSLIAASAVF LARWTLDQSN HPWNQTLQHY TRYETSALKN TVLAMEELQL
401: NTSGSTLIAI HTKYNQQKFK RVATLTSPER VNTLFSR

Arabidopsis Description

CYCA2-1Cyclin-A2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39071]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.