CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89488
KRG97770
KRH06014
KRH17547
KRH31114
KRH37522
KRH41811
KRH48128
KRH56424
KRH60516
KRH62487
KRH68073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	KRH56424	AT1G71380.1	20706207
AT5G11300.1	KRH62487	AT1G71380.1	20706207
AT5G11300.1	KRH06014	AT1G76540.1	12857813
AT5G11300.1	KRH17547	AT1G76540.1	12857813
AT5G11300.1	KRH37522	AT1G76540.1	12857813
AT5G11300.1	KRH48128	AT1G76540.1	12857813
AT5G11300.1	KRG89488	AT3G11270.1	20706207
AT5G11300.1	KRG97770	AT3G11270.1	20706207
AT5G11300.1	KRH31114	AT3G11270.1	20706207
AT5G11300.1	KRH41811	AT3G56150.1	20706207
AT5G11300.1	KRH60516	AT3G56150.1	20706207
AT5G11300.1	KRH68073	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52524	Soybean	nucleus	86.48	89.98
KRH16044	Soybean	nucleus	64.14	67.9
KRH05060	Soybean	nucleus	59.84	63.62
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	47.75	58.1
CDX87087	Canola	plastid	45.9	53.72
AT5G11300.1	Thale cress	plastid	47.75	53.44
Solyc06g065680.2.1	Tomato	nucleus, plastid	51.43	52.84
CDX97090	Canola	nucleus	47.13	52.75
AT5G25380.4	Thale cress	plastid	47.75	52.6
Bra008973.1-P	Field mustard	nucleus, plastid	46.52	51.95
CDX69768	Canola	nucleus, plastid	46.52	51.95
KRH47513	Soybean	nucleus	49.59	50.84
KRH52056	Soybean	nucleus	21.93	50.71
KRH44391	Soybean	nucleus	48.57	50.32
PGSC0003DMT400067117	Potato	plastid	50.41	49.5
KRH05614	Soybean	nucleus	34.02	45.23
KRH15427	Soybean	nucleus, plastid	33.61	45.05
KRH61375	Soybean	nucleus	29.1	43.43
KRH61371	Soybean	nucleus	29.71	41.55
KRH61369	Soybean	nucleus	27.46	40.98
KRH52055	Soybean	nucleus	29.3	39.94
KRH66720	Soybean	endoplasmic reticulum, vacuole	16.19	39.7
KRH61373	Soybean	nucleus, plastid	29.92	38.93
KRH53279	Soybean	plastid	38.11	38.75
KRH64625	Soybean	plastid	38.11	38.43
KRH17986	Soybean	plastid	36.68	35.59
KRH16410	Soybean	plastid	35.66	34.52
KRH60628	Soybean	nucleus	26.23	31.6
KRH51329	Soybean	nucleus, plastid	26.64	31.33
KRH76553	Soybean	nucleus	25.2	28.47
KRH66715	Soybean	nucleus	22.54	28.06
KRH66718	Soybean	plastid	21.31	27.88
KRH14611	Soybean	nucleus	25.0	27.79
KRH73516	Soybean	nucleus	25.0	27.73
KRH28901	Soybean	nucleus	24.39	27.48
KRG95055	Soybean	nucleus	24.8	26.59
KRH66713	Soybean	nucleus	24.39	26.21
KRG95056	Soybean	cytosol	20.08	25.32
Bra036544.1-P	Field mustard	nucleus	46.52	23.0
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	46.52	22.95
KRH44849	Soybean	nucleus	24.18	15.92

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EntrezGene:547780	EMBL:ACUP02002190	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_04G071600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:K7KIM9	EnsemblPlants:KRH61850	ProteinID:KRH61850	ProteinID:KRH61850.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000295EEFB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:5958236..5969445

Molecular Weight (calculated)

55263.6 Da

IEP (calculated)

9.042

GRAVY (calculated)

-0.309

Length

488 amino acids

Sequence
(BLAST)

001: MDKVNRVCAK DEERPLRITR ARARALRGIT PYSRPSLKNE QKNVLRANSK RAASSGNKTF AVVPAVVQQK GRAVLSDISN MCAKPHDKCT KASKFQAKGV
101: CTKKNTKLAA SSVSTDVSSS HDDVRAKLAE ELSTIKMVES NDTLREGVTA DTSLSMQNSV KSDELRNSPN KDIDIICEKL GASDSLTIVD IDSELKDPQL
201: WSFYAPDIYS NIRVTELQRK PLTNYMDKLQ KDINPSMRGI LVDWLVEVSE EYKLVPDTLY LTVNLIDRYL STRLIQKQKL QLLGVTCMLI ASKYEEMCAP
301: RVEEFCFITD NTYTKEEVLK MEREVLNLVH FQLSVPTIKT FLRRFIQAAQ SSYKAPYVEL EFLANYLAEL ALVECSFFQF LPSLIAASAV FLAKWTLNES
401: EHPWNPTLEH YTKYKASDLK TVVLALQDLQ LNTKGCFLNA VREKYKQQKF NCVANLSPKS VQSLFQNQVS LCFAKGKLLR DDTVQRVS

Best Arabidopsis Sequence Match ( AT5G11300.1 )
(BLAST)

001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR

Arabidopsis Description

CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.