CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89488
KRG97770
KRH06014
KRH17547
KRH31114
KRH37522
KRH41811
KRH48128
KRH56424
KRH60516
KRH62487
KRH68073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	KRH56424	AT1G71380.1	20706207
AT5G11300.1	KRH62487	AT1G71380.1	20706207
AT5G11300.1	KRH06014	AT1G76540.1	12857813
AT5G11300.1	KRH17547	AT1G76540.1	12857813
AT5G11300.1	KRH37522	AT1G76540.1	12857813
AT5G11300.1	KRH48128	AT1G76540.1	12857813
AT5G11300.1	KRG89488	AT3G11270.1	20706207
AT5G11300.1	KRG97770	AT3G11270.1	20706207
AT5G11300.1	KRH31114	AT3G11270.1	20706207
AT5G11300.1	KRH41811	AT3G56150.1	20706207
AT5G11300.1	KRH60516	AT3G56150.1	20706207
AT5G11300.1	KRH68073	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05060	Soybean	nucleus	85.25	85.62
KRH52524	Soybean	nucleus	67.25	66.1
KRH61850	Soybean	nucleus	67.9	64.14
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	50.76	58.35
KRH52056	Soybean	nucleus	24.95	54.5
AT5G11300.1	Thale cress	plastid	50.76	53.67
CDX97090	Canola	nucleus	49.46	52.29
CDX87087	Canola	plastid	46.85	51.8
Bra008973.1-P	Field mustard	nucleus, plastid	48.81	51.49
CDX69768	Canola	nucleus, plastid	48.59	51.26
AT5G25380.4	Thale cress	plastid	49.24	51.24
Solyc06g065680.2.1	Tomato	nucleus, plastid	49.89	48.42
KRH47513	Soybean	nucleus	48.37	46.85
KRH61375	Soybean	nucleus	32.54	45.87
KRH44391	Soybean	nucleus	46.2	45.22
PGSC0003DMT400067117	Potato	plastid	48.37	44.87
KRH05614	Soybean	nucleus	33.84	42.51
KRH15427	Soybean	nucleus, plastid	33.41	42.31
KRH61371	Soybean	nucleus	31.45	41.55
KRH66720	Soybean	endoplasmic reticulum, vacuole	17.57	40.7
KRH61369	Soybean	nucleus	28.63	40.37
KRH61373	Soybean	nucleus, plastid	32.54	40.0
KRH52055	Soybean	nucleus	30.8	39.66
KRH53279	Soybean	plastid	36.88	35.42
KRH64625	Soybean	plastid	36.66	34.92
KRH17986	Soybean	plastid	35.36	32.41
KRH16410	Soybean	plastid	34.92	31.94
KRH60628	Soybean	nucleus	27.33	31.11
KRH51329	Soybean	nucleus, plastid	27.77	30.84
KRH66715	Soybean	nucleus	24.73	29.08
KRH66718	Soybean	plastid	23.21	28.69
KRH76553	Soybean	nucleus	26.68	28.47
KRH73516	Soybean	nucleus	27.11	28.41
KRH28901	Soybean	nucleus	26.25	27.94
KRH14611	Soybean	nucleus	26.46	27.79
KRH66713	Soybean	nucleus	26.25	26.65
KRG95055	Soybean	nucleus	26.25	26.59
KRG95056	Soybean	cytosol	21.91	26.1
Bra036544.1-P	Field mustard	nucleus	48.16	22.49
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	47.94	22.35
KRH44849	Soybean	nucleus	27.33	17.0

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100777132	MapMan:13.1.1.1.1	EMBL:ACUP02008768	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_14G128800	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:K7M6F5	EnsemblPlants:KRH16044	ProteinID:KRH16044	ProteinID:KRH16044.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002959D38	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:+:21568754..21575653

Molecular Weight (calculated)

52218.8 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.253

Length

461 amino acids

Sequence
(BLAST)

001: MDRENAVMGG VREGEERGVR VTRAMARAAL GWVSASSRPS FKKECKNNSR TALADVSNIS RKSQARGGYK KTNTKGSSNV SIQVLSTQED VRAELAKDLS
101: TISMVQTHDA IVERPEDTEL VQPSMSVMAG PLLSMQNSMK SDEILSPPNK DIDMITEKLK LSERLGIVDI DSVELKDPQV WSSYAPDIYN NIFVREFERR
201: PLSDYMDKLQ QDITPSMRGI LIDWLVEVSE EYKLVPDTLY LTVNLIDRFL SQSLVQKQRL QLLGVTCMLI ASKYEEICAP RVEEFCFITD NTYTKAEVLK
301: MESGVLNLLH FQLSVPTTKT FLRRFILAAQ SSYKVSYVEL EFLANYLAEL TLVEYSFLQF LPSLIAASAV LIARWTLNQS EHPWNSTMEH YTNYKVSELK
401: TTVLALADLQ LDTKGCSLNA IREKYKQQKF KSVANLSPKP VQSLFEAQVK TVNDAYVKTK Y

Best Arabidopsis Sequence Match ( AT5G11300.1 )
(BLAST)

001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR

Arabidopsis Description

CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.