CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89488
KRG97770
KRH06014
KRH17547
KRH31114
KRH37522
KRH41811
KRH48128
KRH56424
KRH60516
KRH62487
KRH68073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	KRH56424	AT1G71380.1	20706207
AT5G11300.1	KRH62487	AT1G71380.1	20706207
AT5G11300.1	KRH06014	AT1G76540.1	12857813
AT5G11300.1	KRH17547	AT1G76540.1	12857813
AT5G11300.1	KRH37522	AT1G76540.1	12857813
AT5G11300.1	KRH48128	AT1G76540.1	12857813
AT5G11300.1	KRG89488	AT3G11270.1	20706207
AT5G11300.1	KRG97770	AT3G11270.1	20706207
AT5G11300.1	KRH31114	AT3G11270.1	20706207
AT5G11300.1	KRH41811	AT3G56150.1	20706207
AT5G11300.1	KRH60516	AT3G56150.1	20706207
AT5G11300.1	KRH68073	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16044	Soybean	nucleus	85.62	85.25
KRH52524	Soybean	nucleus	63.62	62.26
KRH61850	Soybean	nucleus	63.62	59.84
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	48.37	55.36
KRH52056	Soybean	nucleus	23.31	50.71
CDX87087	Canola	plastid	45.97	50.6
AT5G11300.1	Thale cress	plastid	47.49	50.0
CDX97090	Canola	nucleus	47.06	49.54
AT5G25380.4	Thale cress	plastid	47.71	49.44
Bra008973.1-P	Field mustard	nucleus, plastid	46.84	49.2
CDX69768	Canola	nucleus, plastid	46.62	48.97
Solyc06g065680.2.1	Tomato	nucleus, plastid	48.15	46.53
KRH47513	Soybean	nucleus	47.06	45.38
KRH44391	Soybean	nucleus	45.97	44.8
PGSC0003DMT400067117	Potato	plastid	47.93	44.27
KRH61375	Soybean	nucleus	30.94	43.43
KRH05614	Soybean	nucleus	32.68	40.87
KRH66720	Soybean	endoplasmic reticulum, vacuole	17.43	40.2
KRH61371	Soybean	nucleus	30.5	40.11
KRH15427	Soybean	nucleus, plastid	31.81	40.11
KRH61369	Soybean	nucleus	27.02	37.92
KRH52055	Soybean	nucleus	29.41	37.71
KRH61373	Soybean	nucleus, plastid	30.72	37.6
KRH53279	Soybean	plastid	36.6	35.0
KRH64625	Soybean	plastid	36.17	34.3
KRH17986	Soybean	plastid	34.64	31.61
KRH16410	Soybean	plastid	34.42	31.35
KRH60628	Soybean	nucleus	26.8	30.37
KRH51329	Soybean	nucleus, plastid	27.23	30.12
KRH66715	Soybean	nucleus	24.84	29.08
KRH66718	Soybean	plastid	23.31	28.69
KRH76553	Soybean	nucleus	26.36	28.01
KRH73516	Soybean	nucleus	26.58	27.73
KRH28901	Soybean	nucleus	25.93	27.48
KRH14611	Soybean	nucleus	26.14	27.33
KRH66713	Soybean	nucleus	26.36	26.65
KRG95055	Soybean	nucleus	25.93	26.15
KRG95056	Soybean	cytosol	21.79	25.84
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	47.28	21.94
Bra036544.1-P	Field mustard	nucleus	47.06	21.88
KRH44849	Soybean	nucleus	25.49	15.79

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100805701	MapMan:13.1.1.1.1	UniProt:A0A0R0FR66	EMBL:ACUP02010663	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_17G204900	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlants:KRH05060	ProteinID:KRH05060	ProteinID:KRH05060.1	ProteinID:KRH05061.1
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0006EDB2E9	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:33292781..33299900

Molecular Weight (calculated)

51452.9 Da

IEP (calculated)

7.090

GRAVY (calculated)

-0.233

Length

459 amino acids

Sequence
(BLAST)

001: MVRENAVMGG ASEERGVRVT RAMARAVLGG VSASSRPSFK KQHKNNKGFG RVALADVTNI SKKGCATSKS QARGGYKKTN TKGASNVSIQ VLSTQEDVRA
101: KLAKDLPSIS MVQSHDANVA ERQEGTEVVQ PSMSVMAGPL LSMQDSMKSD EILRSPNKDV DMMITEKLKL SDGLDIVDID SVELKDPQVW SSYAPDIYNS
201: IFVREFERRP SSDYMDMLQQ DITPSMRGIL IDWLVEVSEE YKLLPDTLYL TVNLIDRSLS QSLVQKQRLQ LLGVTCMLIA SKYEEICAPR VEEFCFITDN
301: TYTKAEVLKM ESEVLNLLHF QLSVPTTKTF LRRFILASQS SYKVSYVELE FLANYLAELT LVEYSFLQFL PSLIAASAVL LARWTLNQSE HPWNSTMEHY
401: TNYKVSELKT TVLALADLQH DMKGCSLNSI REKYKQQKEC GKFVSETGAV TFQGSSIKL

Best Arabidopsis Sequence Match ( AT5G11300.1 )
(BLAST)

001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR

Arabidopsis Description

CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.