Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52056 | Soybean | nucleus | 52.0 | 92.42 |
| KRH61369 | Soybean | nucleus | 69.07 | 79.2 |
| KRH52055 | Soybean | nucleus | 74.93 | 78.49 |
| KRH61371 | Soybean | nucleus | 72.0 | 77.36 |
| KRH61375 | Soybean | nucleus | 56.27 | 64.53 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 56.0 | 57.53 |
| OQU91386 | Sorghum | nucleus | 39.73 | 57.09 |
| AT5G43080.1 | Thale cress | nucleus | 53.07 | 56.06 |
| CDY22369 | Canola | nucleus | 52.27 | 55.84 |
| CDY06752 | Canola | nucleus | 42.4 | 55.79 |
| Bra033658.1-P | Field mustard | nucleus | 51.73 | 54.49 |
| GSMUA_Achr10P... | Banana | nucleus | 45.07 | 53.31 |
| Solyc12g088530.1.1 | Tomato | nucleus | 50.13 | 53.11 |
| PGSC0003DMT400030222 | Potato | nucleus | 50.13 | 53.11 |
| PGSC0003DMT400030176 | Potato | nucleus | 49.87 | 52.53 |
| Solyc12g088470.1.1 | Tomato | nucleus | 50.4 | 52.5 |
| Solyc12g088500.1.1 | Tomato | nucleus | 49.33 | 52.26 |
| Bra040793.1-P | Field mustard | nucleus | 50.4 | 52.07 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 50.4 | 52.07 |
| KRH15427 | Soybean | nucleus, plastid | 50.4 | 51.92 |
| CDY06757 | Canola | nucleus, plastid | 50.13 | 51.79 |
| CDY47596 | Canola | nucleus | 50.13 | 51.79 |
| Solyc04g078310.2.1 | Tomato | nucleus | 51.2 | 51.75 |
| CDY66770 | Canola | nucleus | 49.87 | 51.66 |
| PGSC0003DMT400055428 | Potato | nucleus | 50.67 | 51.63 |
| Solyc12g088520.1.1 | Tomato | nucleus | 48.8 | 51.55 |
| Bra032220.1-P | Field mustard | nucleus | 49.07 | 51.54 |
| CDY17039 | Canola | nucleus | 49.87 | 51.52 |
| KRH05614 | Soybean | nucleus | 50.4 | 51.5 |
| CDY23653 | Canola | nucleus | 48.8 | 51.26 |
| CDY17091 | Canola | nucleus | 48.8 | 51.12 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 38.4 | 50.35 |
| CDY17037 | Canola | nucleus, plastid | 48.8 | 50.27 |
| AT1G47220.1 | Thale cress | nucleus | 43.73 | 50.15 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 49.33 | 50.0 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 48.27 | 49.73 |
| Bra040710.1-P | Field mustard | nucleus | 49.07 | 49.6 |
| AT1G47210.2 | Thale cress | nucleus | 49.07 | 49.46 |
| CDY47595 | Canola | nucleus, plastid | 48.8 | 49.33 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 48.27 | 48.92 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 50.4 | 48.34 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 47.73 | 48.25 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 47.73 | 47.99 |
| TraesCS4A01G236700.2 | Wheat | plastid | 47.73 | 47.73 |
| Zm00001d033365_P002 | Maize | nucleus | 45.6 | 45.97 |
| TraesCS5B01G078200.1 | Wheat | plastid | 45.07 | 44.83 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 42.93 | 44.72 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 45.07 | 44.71 |
| TraesCS5A01G072000.1 | Wheat | plastid | 44.8 | 44.68 |
| Zm00001d013744_P001 | Maize | nucleus | 42.4 | 44.54 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 28.8 | 44.26 |
| Os12t0581800-01 | Rice | nucleus, plastid | 45.33 | 44.16 |
| EES16237 | Sorghum | nucleus, plastid | 49.07 | 42.99 |
| Zm00001d030849_P001 | Maize | nucleus | 47.73 | 42.32 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 40.53 | 40.43 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 46.4 | 39.82 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 38.93 | 38.42 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 38.93 | 38.42 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 45.87 | 37.89 |
| EER95303 | Sorghum | nucleus, plastid | 37.33 | 36.75 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 33.33 | 36.44 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 32.53 | 35.78 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 38.4 | 34.7 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 18.4 | 34.67 |
| KRH16044 | Soybean | nucleus | 40.0 | 32.54 |
| KRH53279 | Soybean | plastid | 41.33 | 32.29 |
| KRH64625 | Soybean | plastid | 41.6 | 32.23 |
| KRH47513 | Soybean | nucleus | 40.0 | 31.51 |
| KRH52524 | Soybean | nucleus | 39.2 | 31.34 |
| KRH05060 | Soybean | nucleus | 37.6 | 30.72 |
| KRH17986 | Soybean | plastid | 40.27 | 30.02 |
| KRH61850 | Soybean | nucleus | 38.93 | 29.92 |
| KRH16410 | Soybean | plastid | 39.73 | 29.56 |
| KRH44391 | Soybean | nucleus | 36.8 | 29.3 |
| Os03t0208700-00 | Rice | nucleus | 30.13 | 27.63 |
| Zm00001d048127_P001 | Maize | plastid | 35.2 | 27.56 |
| Os03t0607600-00 | Rice | nucleus | 44.0 | 27.14 |
| KRH51329 | Soybean | nucleus, plastid | 26.67 | 24.1 |
| KRH73516 | Soybean | nucleus | 28.27 | 24.09 |
| KRH60628 | Soybean | nucleus | 25.87 | 23.95 |
| KRH66715 | Soybean | nucleus | 24.8 | 23.72 |
| KRH14611 | Soybean | nucleus | 27.73 | 23.69 |
| KRH66718 | Soybean | plastid | 22.67 | 22.79 |
| KRH76553 | Soybean | nucleus | 26.13 | 22.69 |
| KRH28901 | Soybean | nucleus | 25.87 | 22.4 |
| KRG95056 | Soybean | cytosol | 22.4 | 21.71 |
| KRG95055 | Soybean | nucleus | 26.13 | 21.54 |
| KRH66713 | Soybean | nucleus | 25.87 | 21.37 |
| Os03t0208800-00 | Rice | nucleus | 14.93 | 14.11 |
| KRH44849 | Soybean | nucleus | 24.27 | 12.28 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EMBL:ACUP02002162 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EnsemblPlantsGene:GLYMA_04G043600 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | UniProt:I1JTP0 | EnsemblPlants:KRH61373 | ProteinID:KRH61373 | ProteinID:KRH61373.1 | ProteinID:KRH61374.1 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000296B972 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:-:3496291..3499057
Molecular Weight (calculated)
43315.8 Da
IEP (calculated)
8.871
GRAVY (calculated)
-0.224
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: METHSLIHPT LQLHLLLSLC SKFTHTRKKM ETRAASKRKA NAATIVIVEK QHPKRQRVVL GELSNLPNII VPETQNPRKE KLQCRKNPNM KKPSLTNNTL
101: SFPQIDESYD FEIFEYLHAM ERKRRPMIDY VEKVQKQVTT TMRAILVDWL VEVAEEYKLL PDTLHLSVSY IDRFLSVSPV SKSRLQLLGV SSMLIAAKYE
201: EVDPPRVDAF CNITDNTYHK AEVVKMEADI LKTLKFEMGN PTVNTFLRRF ADVASENQKT PNLQIEFLIG YLAELSLLDY DCLIFLPSIL AASAIFLARF
301: IIWPEVHPWT SSLSECLGYT PADLKECVLI LHDLYLSRKA VSFKAVREKY KQHKFKYVAN LPSPPHVPSY YFEEQ
101: SFPQIDESYD FEIFEYLHAM ERKRRPMIDY VEKVQKQVTT TMRAILVDWL VEVAEEYKLL PDTLHLSVSY IDRFLSVSPV SKSRLQLLGV SSMLIAAKYE
201: EVDPPRVDAF CNITDNTYHK AEVVKMEADI LKTLKFEMGN PTVNTFLRRF ADVASENQKT PNLQIEFLIG YLAELSLLDY DCLIFLPSIL AASAIFLARF
301: IIWPEVHPWT SSLSECLGYT PADLKECVLI LHDLYLSRKA VSFKAVREKY KQHKFKYVAN LPSPPHVPSY YFEEQ
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.