Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95303 | Sorghum | nucleus, plastid | 61.38 | 77.17 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 28.18 | 55.33 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 42.17 | 53.72 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 41.54 | 52.37 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 41.34 | 52.11 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 35.91 | 50.15 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 35.07 | 49.27 |
| KRH52056 | Soybean | nucleus | 20.67 | 46.92 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 39.25 | 45.3 |
| CDY06752 | Canola | nucleus | 26.72 | 44.91 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 26.1 | 43.71 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 31.11 | 40.82 |
| AT5G43080.1 | Thale cress | nucleus | 29.85 | 40.28 |
| CDY22369 | Canola | nucleus | 29.44 | 40.17 |
| Solyc12g088500.1.1 | Tomato | nucleus | 29.65 | 40.11 |
| PGSC0003DMT400030176 | Potato | nucleus | 29.65 | 39.89 |
| Solyc12g088530.1.1 | Tomato | nucleus | 29.23 | 39.55 |
| PGSC0003DMT400030222 | Potato | nucleus | 29.23 | 39.55 |
| Solyc12g088520.1.1 | Tomato | nucleus | 29.23 | 39.44 |
| Bra033658.1-P | Field mustard | nucleus | 29.23 | 39.33 |
| Solyc12g088470.1.1 | Tomato | nucleus | 29.44 | 39.17 |
| CDY17091 | Canola | nucleus | 29.23 | 39.11 |
| KRH61375 | Soybean | nucleus | 26.51 | 38.84 |
| KRH15427 | Soybean | nucleus, plastid | 29.44 | 38.74 |
| AT1G47220.1 | Thale cress | nucleus | 26.3 | 38.53 |
| CDY17037 | Canola | nucleus, plastid | 29.02 | 38.19 |
| KRH05614 | Soybean | nucleus | 29.23 | 38.15 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 28.81 | 37.91 |
| CDY66770 | Canola | nucleus | 28.6 | 37.85 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 29.23 | 37.84 |
| KRH61371 | Soybean | nucleus | 27.56 | 37.82 |
| CDY47596 | Canola | nucleus | 28.6 | 37.74 |
| Bra040793.1-P | Field mustard | nucleus | 28.6 | 37.74 |
| KRH61369 | Soybean | nucleus | 25.68 | 37.61 |
| Bra032220.1-P | Field mustard | nucleus | 27.97 | 37.53 |
| PGSC0003DMT400055428 | Potato | nucleus | 28.81 | 37.5 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 28.18 | 37.5 |
| Solyc04g078310.2.1 | Tomato | nucleus | 29.02 | 37.47 |
| Bra040710.1-P | Field mustard | nucleus | 29.02 | 37.47 |
| CDY47595 | Canola | nucleus, plastid | 29.02 | 37.47 |
| CDY17039 | Canola | nucleus | 28.39 | 37.47 |
| CDY23653 | Canola | nucleus | 27.77 | 37.25 |
| KRH52055 | Soybean | nucleus | 27.77 | 37.15 |
| AT1G47210.2 | Thale cress | nucleus | 28.81 | 37.1 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 27.97 | 36.91 |
| CDY06757 | Canola | nucleus, plastid | 27.97 | 36.91 |
| Zm00001d013744_P001 | Maize | nucleus | 27.35 | 36.69 |
| Zm00001d033365_P002 | Maize | nucleus | 28.39 | 36.56 |
| PGSC0003DMT400056625 | Potato | nucleus | 28.81 | 36.32 |
| Zm00001d030849_P001 | Maize | nucleus | 31.94 | 36.17 |
| Solyc10g049360.1.1 | Tomato | nucleus | 28.18 | 35.71 |
| Os03t0208700-00 | Rice | nucleus | 30.48 | 35.7 |
| KRH61373 | Soybean | nucleus, plastid | 27.56 | 35.2 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 31.94 | 35.01 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 24.84 | 34.9 |
| Zm00001d032128_P001 | Maize | cytosol | 9.6 | 29.11 |
| Zm00001d019469_P001 | Maize | extracellular | 8.56 | 28.67 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 23.59 | 23.3 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 25.26 | 23.22 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 9.6 | 23.0 |
| Zm00001d040381_P001 | Maize | plastid | 25.26 | 22.7 |
| Zm00001d036360_P002 | Maize | nucleus | 18.58 | 20.99 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 22.34 | 20.98 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 19.0 | 20.27 |
| Zm00001d026129_P001 | Maize | nucleus | 17.75 | 19.95 |
| Zm00001d010656_P001 | Maize | nucleus | 18.37 | 19.73 |
| Zm00001d010404_P001 | Maize | nucleus | 19.83 | 19.59 |
| Zm00001d043164_P002 | Maize | nucleus | 19.42 | 19.21 |
| Zm00001d002662_P010 | Maize | nucleus | 17.75 | 18.68 |
| Zm00001d008221_P001 | Maize | nucleus | 18.58 | 18.58 |
| Os03t0208800-00 | Rice | nucleus | 14.82 | 17.88 |
| Zm00001d020033_P001 | Maize | nucleus | 19.0 | 16.73 |
| Zm00001d020996_P001 | Maize | nucleus | 18.16 | 15.99 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | UniProt:A0A1D6PHV1 | ProteinID:AQL08905.1 | ncoils:Coil | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00084260EF | EnsemblPlantsGene:Zm00001d048127 |
| EnsemblPlants:Zm00001d048127_P001 | EnsemblPlants:Zm00001d048127_T001 | SEG:seg | : | : | : |
Description
Putative cyclin-A3-1
Coordinates
chr9:-:150511914..150520610
Molecular Weight (calculated)
54501.1 Da
IEP (calculated)
9.104
GRAVY (calculated)
-0.301
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRKENSAHS APPLNRPRGK RKALAELPKS NGLNMNHDSA PRPSKPRTRS AARAEAEAEA AMKRRKAGDA ARWPMDTRQP DAEAAVAPYV GDIDRYLRSL
101: EVEPLRRPSH SYFQDIQKNI CPKMRAILVD WLVEVAEEFK LHAETLHLAV SYVDRFLTMN VVARNKLQLL GVTALLVAAK YEEIESSKMK NLSLEQSTGY
201: RVFDLQKSIY VIHELQLTIR CPNQVAIREK YKDPKVEPLR RPSPGYFQDI QKDICPKMRA VVVDWLVVLA EEFELHAETL HLAVSYVDRF LTMNVVARDK
301: LQLLAVTALL VAAKYEEIES AEMKVVKMEA DLLKSLNFQI GGPTVTTFLR QFIASCRGGN STSREKLEFV CSYLADLSLL DYDCISYLPS VVAAACLFVA
401: RFTIHPKTRP WNLTLEQNTG YKVFDLQKSI YVIHELQLTI RCPDQEATRK KYKDPKFGCV STMVSPREIP TSFPEDCHK
101: EVEPLRRPSH SYFQDIQKNI CPKMRAILVD WLVEVAEEFK LHAETLHLAV SYVDRFLTMN VVARNKLQLL GVTALLVAAK YEEIESSKMK NLSLEQSTGY
201: RVFDLQKSIY VIHELQLTIR CPNQVAIREK YKDPKVEPLR RPSPGYFQDI QKDICPKMRA VVVDWLVVLA EEFELHAETL HLAVSYVDRF LTMNVVARDK
301: LQLLAVTALL VAAKYEEIES AEMKVVKMEA DLLKSLNFQI GGPTVTTFLR QFIASCRGGN STSREKLEFV CSYLADLSLL DYDCISYLPS VVAAACLFVA
401: RFTIHPKTRP WNLTLEQNTG YKVFDLQKSI YVIHELQLTI RCPDQEATRK KYKDPKFGCV STMVSPREIP TSFPEDCHK
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.