Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06752 | Canola | nucleus | 65.68 | 85.26 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 80.0 | 81.32 |
| CDY17091 | Canola | nucleus | 78.65 | 81.28 |
| CDY47595 | Canola | nucleus, plastid | 81.08 | 80.86 |
| CDY17037 | Canola | nucleus, plastid | 79.46 | 80.77 |
| Bra040710.1-P | Field mustard | nucleus | 79.19 | 78.98 |
| AT1G47210.2 | Thale cress | nucleus | 72.7 | 72.31 |
| AT5G43080.1 | Thale cress | nucleus | 66.76 | 69.58 |
| AT1G47220.1 | Thale cress | nucleus | 55.95 | 63.3 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 59.73 | 60.55 |
| OQU91386 | Sorghum | nucleus | 42.16 | 59.77 |
| KRH52056 | Soybean | nucleus | 34.05 | 59.72 |
| PGSC0003DMT400055428 | Potato | nucleus | 57.3 | 57.61 |
| KRH15427 | Soybean | nucleus, plastid | 56.22 | 57.14 |
| GSMUA_Achr10P... | Banana | nucleus | 48.92 | 57.1 |
| Solyc12g088530.1.1 | Tomato | nucleus | 54.59 | 57.06 |
| Solyc04g078310.2.1 | Tomato | nucleus | 57.03 | 56.87 |
| PGSC0003DMT400030222 | Potato | nucleus | 54.05 | 56.5 |
| KRH05614 | Soybean | nucleus | 55.41 | 55.86 |
| PGSC0003DMT400030176 | Potato | nucleus | 53.51 | 55.62 |
| Solyc12g088520.1.1 | Tomato | nucleus | 52.7 | 54.93 |
| KRH61375 | Soybean | nucleus | 48.38 | 54.74 |
| Solyc12g088470.1.1 | Tomato | nucleus | 53.24 | 54.72 |
| Solyc12g088500.1.1 | Tomato | nucleus | 52.16 | 54.52 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 55.68 | 52.69 |
| KRH52055 | Soybean | nucleus | 50.54 | 52.23 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 52.16 | 52.16 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 52.43 | 52.01 |
| KRH61369 | Soybean | nucleus | 45.95 | 51.99 |
| KRH61371 | Soybean | nucleus | 48.65 | 51.58 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 51.62 | 51.48 |
| Zm00001d033365_P002 | Maize | nucleus | 51.62 | 51.34 |
| TraesCS5B01G078200.1 | Wheat | plastid | 52.16 | 51.19 |
| TraesCS4A01G236700.2 | Wheat | plastid | 51.35 | 50.67 |
| TraesCS5A01G072000.1 | Wheat | plastid | 51.35 | 50.53 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 51.62 | 50.53 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 38.92 | 50.35 |
| KRH61373 | Soybean | nucleus, plastid | 50.0 | 49.33 |
| Zm00001d013744_P001 | Maize | nucleus | 46.76 | 48.46 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 46.49 | 47.78 |
| Os12t0581800-01 | Rice | nucleus, plastid | 49.46 | 47.53 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 30.0 | 45.49 |
| Zm00001d030849_P001 | Maize | nucleus | 51.62 | 45.15 |
| EES16237 | Sorghum | nucleus, plastid | 52.16 | 45.09 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 51.08 | 43.25 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 50.81 | 41.41 |
| EER95303 | Sorghum | nucleus, plastid | 40.81 | 39.63 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 35.95 | 38.78 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 39.19 | 38.56 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 39.46 | 38.42 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 35.41 | 38.42 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 38.65 | 37.63 |
| AT1G44110.1 | Thale cress | plastid | 44.32 | 35.65 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 42.7 | 35.11 |
| AT5G11300.1 | Thale cress | plastid | 41.35 | 35.09 |
| AT5G25380.4 | Thale cress | plastid | 41.89 | 34.99 |
| AT1G77390.1 | Thale cress | plastid | 40.81 | 34.16 |
| AT1G80370.1 | Thale cress | plastid | 42.43 | 34.06 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 36.49 | 32.53 |
| Os03t0607600-00 | Rice | nucleus | 49.46 | 30.1 |
| Zm00001d048127_P001 | Maize | plastid | 37.84 | 29.23 |
| AT2G26760.1 | Thale cress | nucleus | 29.46 | 28.17 |
| Os03t0208700-00 | Rice | nucleus | 29.19 | 26.41 |
| AT3G11520.1 | Thale cress | nucleus | 28.92 | 25.85 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 18.38 | 25.66 |
| AT4G35620.1 | Thale cress | nucleus | 29.19 | 25.17 |
| AT5G06150.1 | Thale cress | nucleus | 30.0 | 24.94 |
| AT2G17620.1 | Thale cress | nucleus | 28.92 | 24.94 |
| AT4G37490.1 | Thale cress | nucleus | 28.38 | 24.53 |
| AT1G20610.1 | Thale cress | nucleus | 27.84 | 24.01 |
| AT1G76310.3 | Thale cress | nucleus | 28.11 | 22.66 |
| AT1G16330.1 | Thale cress | nucleus | 26.22 | 14.97 |
| AT1G34460.5 | Thale cress | cytosol | 18.92 | 14.06 |
| Os03t0208800-00 | Rice | nucleus | 14.32 | 13.35 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:841126 | ProteinID:AAG52644.1 | ProteinID:AEE32140.1 | ProteinID:AEE32141.1 |
| EMBL:AK226253 | ArrayExpress:AT1G47230 | EnsemblPlantsGene:AT1G47230 | RefSeq:AT1G47230 | TAIR:AT1G47230 | RefSeq:AT1G47230-TAIR-G |
| EnsemblPlants:AT1G47230.2 | TAIR:AT1G47230.2 | EMBL:AY087628 | Unigene:At.38662 | Symbol:CYCA3;4 | InterPro:Cyclin-A_plant |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | RefSeq:NP_175156.1 | RefSeq:NP_973983.1 | PFAM:PF00134 |
| PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF270 | UniProt:Q3ECW2 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000034F45F |
| SEG:seg | : | : | : | : | : |
Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
Coordinates
chr1:+:17306577..17308848
Molecular Weight (calculated)
42319.7 Da
IEP (calculated)
8.442
GRAVY (calculated)
-0.202
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASRKYEE IGPPKVEDFC
201: YITDNTFTKQ EVVSMEADIL LALQFELGSP TIKTFLRRFT RVAQEDFKDS QLQIEFLCCY LSELSMLDYT CVKYLPSLLS ASAVFLARFI IRPKQHPWNQ
301: MLEEYTKYKA ADLQVCVGII HDLYLSRRGN TLEAVRNKYK QHKYKCVATM PVSPELPLAF FEDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASRKYEE IGPPKVEDFC
201: YITDNTFTKQ EVVSMEADIL LALQFELGSP TIKTFLRRFT RVAQEDFKDS QLQIEFLCCY LSELSMLDYT CVKYLPSLLS ASAVFLARFI IRPKQHPWNQ
301: MLEEYTKYKA ADLQVCVGII HDLYLSRRGN TLEAVRNKYK QHKYKCVATM PVSPELPLAF FEDITIRGMA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.