Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79389 | Canola | plastid | 76.14 | 81.06 |
| CDX67944 | Canola | plastid | 75.49 | 80.56 |
| CDY39984 | Canola | plastid | 78.09 | 80.36 |
| CDY38664 | Canola | nucleus, plastid | 79.18 | 80.22 |
| CDY48212 | Canola | nucleus | 65.51 | 80.11 |
| CDY37592 | Canola | mitochondrion, plastid | 79.18 | 79.87 |
| Bra003563.1-P | Field mustard | plastid | 74.84 | 79.86 |
| Bra000822.1-P | Field mustard | nucleus | 65.29 | 79.84 |
| CDY61993 | Canola | nucleus | 65.29 | 79.84 |
| Bra008477.1-P | Field mustard | plastid | 78.74 | 79.43 |
| Bra031463.1-P | Field mustard | nucleus | 63.12 | 78.86 |
| CDX87305 | Canola | plastid | 78.31 | 78.14 |
| Bra035186.1-P | Field mustard | plastid | 77.87 | 77.71 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 69.63 | 71.33 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 34.27 | 63.97 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 57.92 | 54.49 |
| KRH47513 | Soybean | nucleus | 55.97 | 54.2 |
| KRH44391 | Soybean | nucleus | 53.8 | 52.65 |
| PGSC0003DMT400006576 | Potato | nucleus | 51.19 | 50.97 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 50.33 | 50.66 |
| AT5G25380.4 | Thale cress | plastid | 45.55 | 47.4 |
| AT5G43080.1 | Thale cress | nucleus | 35.79 | 46.48 |
| AT5G11300.1 | Thale cress | plastid | 43.17 | 45.64 |
| Os12t0502300-01 | Rice | nucleus, plastid | 47.94 | 45.1 |
| OQU77084 | Sorghum | nucleus | 47.07 | 44.47 |
| TraesCS5B01G114300.2 | Wheat | plastid | 47.51 | 43.2 |
| TraesCSU01G054300.1 | Wheat | nucleus | 46.85 | 43.11 |
| TraesCS5D01G121100.2 | Wheat | plastid | 47.51 | 43.11 |
| TraesCS3A01G523600.1 | Wheat | plastid | 47.07 | 42.8 |
| TraesCS3D01G529100.1 | Wheat | plastid | 46.64 | 42.57 |
| TraesCS5A01G108500.2 | Wheat | plastid | 46.85 | 42.52 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 34.06 | 42.43 |
| AT1G47220.1 | Thale cress | nucleus | 29.72 | 41.9 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 47.29 | 41.84 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 45.99 | 41.81 |
| AT1G47210.2 | Thale cress | nucleus | 33.62 | 41.67 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 43.6 | 41.61 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 48.59 | 41.33 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 43.17 | 41.03 |
| AT1G44110.1 | Thale cress | plastid | 37.31 | 37.39 |
| AT1G77390.1 | Thale cress | plastid | 35.79 | 37.33 |
| AT2G26760.1 | Thale cress | nucleus | 25.16 | 29.97 |
| AT3G11520.1 | Thale cress | nucleus | 25.81 | 28.74 |
| AT2G17620.1 | Thale cress | nucleus | 26.46 | 28.44 |
| AT4G35620.1 | Thale cress | nucleus | 25.38 | 27.27 |
| AT5G06150.1 | Thale cress | nucleus | 26.25 | 27.19 |
| AT4G37490.1 | Thale cress | nucleus | 24.51 | 26.4 |
| AT1G20610.1 | Thale cress | nucleus | 24.08 | 25.87 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 14.75 | 25.66 |
| AT1G76310.3 | Thale cress | nucleus | 24.73 | 24.84 |
| AT1G16330.1 | Thale cress | nucleus | 24.73 | 17.59 |
| AT1G34460.5 | Thale cress | cytosol | 16.7 | 15.46 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:844377 | UniProt:A0A178WID3 | ProteinID:AAG52439.1 | ProteinID:AEE36392.1 |
| ArrayExpress:AT1G80370 | EnsemblPlantsGene:AT1G80370 | RefSeq:AT1G80370 | TAIR:AT1G80370 | RefSeq:AT1G80370-TAIR-G | EnsemblPlants:AT1G80370.1 |
| TAIR:AT1G80370.1 | Symbol:CYCA2;4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008283 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010374 | GO:GO:0051301 |
| RefSeq:NP_178153.1 | ProteinID:OAP18120.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0005020 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009013 | PO:PO:0009025 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF346 | UniProt:Q9C968 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000009E614 |
| SEG:seg | : | : | : | : | : |
Description
CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
Coordinates
chr1:+:30213705..30217102
Molecular Weight (calculated)
51639.6 Da
IEP (calculated)
9.034
GRAVY (calculated)
-0.270
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.