Factsheet for Bra035186.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005565.1-P	nucleus
Bra021808.1-P	nucleus
Bra022897.1-P	nucleus
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80370.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G80370.1	Bra005565.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra021808.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra022897.1-P	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87305	Canola	plastid	99.13	99.13
Bra003563.1-P	Field mustard	plastid	76.41	81.71
Bra008477.1-P	Field mustard	plastid	80.52	81.4
AT1G80370.1	Thale cress	plastid	77.71	77.87
Bra000822.1-P	Field mustard	nucleus	59.74	73.21
Bra031463.1-P	Field mustard	nucleus	57.14	71.54
Bra026756.1-P	Field mustard	plastid	59.96	67.73
Bra016654.1-P	Field mustard	nucleus, plastid	63.42	65.84
Bra026120.1-P	Field mustard	nucleus	64.94	64.38
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	33.12	61.94
VIT_09s0002g05240.t01	Wine grape	nucleus	55.63	52.45
KRH47513	Soybean	nucleus	51.95	50.42
KRH44391	Soybean	nucleus	49.78	48.83
PGSC0003DMT400006576	Potato	nucleus	47.19	47.08
Solyc03g120440.1.1	Tomato	nucleus, plastid	46.1	46.51
Bra033658.1-P	Field mustard	nucleus	34.2	44.38
Bra008973.1-P	Field mustard	nucleus, plastid	41.77	44.16
Os12t0502300-01	Rice	nucleus, plastid	46.32	43.67
OQU77084	Sorghum	nucleus	45.24	42.83
Bra040710.1-P	Field mustard	nucleus	32.9	40.97
Bra040792.1-P	Field mustard	nucleus, plastid	32.25	40.93
TraesCSU01G054300.1	Wheat	nucleus	44.37	40.92
Bra032220.1-P	Field mustard	nucleus	31.6	40.9
TraesCS5D01G121100.2	Wheat	plastid	44.81	40.75
Zm00001d014756_P006	Maize	nucleus, plastid	45.89	40.69
TraesCS5B01G114300.2	Wheat	plastid	44.59	40.63
TraesCS3A01G523600.1	Wheat	plastid	44.59	40.63
Bra040793.1-P	Field mustard	nucleus	31.82	40.5
GSMUA_Achr3P25340_001	Banana	nucleus	47.4	40.41
TraesCS3D01G529100.1	Wheat	plastid	44.16	40.4
KXG23504	Sorghum	mitochondrion, nucleus	42.21	40.37
TraesCS5A01G108500.2	Wheat	plastid	44.16	40.16
HORVU3Hr1G114440.21	Barley	nucleus, plastid	43.72	39.84
Bra040753.1-P	Field mustard	nucleus, plastid	31.17	39.67
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	41.56	39.59
Bra015671.1-P	Field mustard	plastid	32.9	39.38
Bra023606.1-P	Field mustard	plastid	35.5	39.14
Bra032202.1-P	Field mustard	plastid	34.63	37.91
Bra022173.1-P	Field mustard	nucleus, plastid	28.14	34.48
Bra017726.1-P	Field mustard	nucleus	25.11	28.57
Bra016460.1-P	Field mustard	nucleus	24.68	27.8
Bra003727.1-P	Field mustard	nucleus	22.73	27.42
Bra002046.1-P	Field mustard	nucleus	23.16	27.23
Bra028741.1-P	Field mustard	nucleus	24.03	26.75
Bra037265.1-P	Field mustard	nucleus	23.59	26.65
Bra025831.1-P	Field mustard	nucleus	23.59	26.59
Bra024504.1-P	Field mustard	nucleus	24.03	26.49
Bra005880.1-P	Field mustard	nucleus, plastid	23.59	26.33
Bra015762.1-P	Field mustard	nucleus	24.46	26.22
Bra011769.1-P	Field mustard	nucleus	22.08	23.83
Bra026065.1-P	Field mustard	nucleus	22.51	20.55
Bra036544.1-P	Field mustard	nucleus	43.29	20.26
Bra016640.1-P	Field mustard	nucleus	23.59	16.64

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra035186	EnsemblPlants:Bra035186.1	EnsemblPlants:Bra035186.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4F289	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002541E93	SEG:seg

Description

AT1G80370 (E=5e-160) CYCA2;4 | CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator

Coordinates

chrA07:-:22502179..22504380

Molecular Weight (calculated)

51886.5 Da

IEP (calculated)

9.294

GRAVY (calculated)

-0.259

Length

462 amino acids

Sequence
(BLAST)

001: MKEIAVSGNT VPLHARPVTR ALASALRASK LLITSSSPNQ GRVLRANSKR RAFDDDKKNA SPPKKKKKRA LLKDITNVTS HNNSYTTSCF SAAKLQVQIK
101: KGRACSSKVA SSSATSQVTD DVKLQVVSDS EGVSLSGCTG TNEASSSSKP SSRLPPRPLG RLTSTVERSC VGGSSTVASI PKFIDIDSDV KDPLLCSLYA
201: PDIHYNLRVS ELKRRPCPDF MGRTQRDVTQ TMRGVLVDWL VEVSEEYTLA SDTLYLTVYL IDWFLHGNCM ERQRLQLLGI TCMLIASKYE EIYAPRIEEF
301: CFITDNTYTR DEVLEMESQV LKHFSFQIYT PTSKTFLRRF LRAAQPSHLM MPSVEMEFLA NYLTELTLIE CQFLKYLPSV IAASAVFLAK WTMNQSSHPW
401: NATLEHYTTY KASDLKECVQ ALQDLQLNTK GCPLNSIRIK YRQDMFKCVA VFTSPKVPER LF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.