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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001010.1-P
Bra001415.1-P
Bra002236.1-P
Bra003644.1-P
Bra004810.1-P
Bra006091.1-P
Bra006664.1-P
Bra008222.1-P
Bra008983.1-P
Bra008984.1-P
Bra010508.1-P
Bra010728.1-P
Bra011568.1-P
Bra011642.1-P
Bra013108.1-P
Bra015165.1-P
Bra018036.1-P
Bra019845.1-P
Bra022660.1-P
Bra023311.1-P
Bra023312.1-P
Bra025260.1-P
Bra027579.1-P
Bra028187.1-P
Bra028409.1-P
Bra029227.1-P
Bra029917.1-P
Bra030844.1-P
Bra032991.1-P
Bra034380.1-P
Bra034402.1-P
Bra034824.1-P
Bra035427.1-P
Bra036764.1-P
Bra037664.1-P
Bra038550.1-P
Bra038667.1-P
Bra039089.1-P
Bra039131.1-P
Bra039578.1-P
Bra040507.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47220.1 Bra034402.1-P AT1G35720.1 20706207
AT1G47220.1 Bra036764.1-P AT1G35720.1 20706207
AT1G47220.1 Bra039578.1-P AT1G35720.1 20706207
AT1G47220.1 Bra035427.1-P AT1G59750.1 20706207
AT1G47220.1 Bra008222.1-P AT1G75750.1 20706207
AT1G47220.1 Bra029227.1-P AT1G75750.1 20706207
AT1G47220.1 Bra038550.1-P AT1G75750.1 20706207
AT1G47220.1 Bra003644.1-P AT1G78380.1 20706207
AT1G47220.1 Bra015165.1-P AT2G05710.1 20706207
AT1G47220.1 Bra019845.1-P AT2G05710.1 20706207
AT1G47220.1 Bra034380.1-P AT2G27970.1 20706207
AT1G47220.1 Bra004810.1-P AT2G44160.1 20706207
AT1G47220.1 Bra037664.1-P AT2G44160.1 20706207
AT1G47220.1 Bra001010.1-P AT3G01280.1 20706207
AT1G47220.1 Bra006664.1-P AT3G01280.1 20706207
AT1G47220.1 Bra039131.1-P AT3G01280.1 20706207
AT1G47220.1 Bra040507.1-P AT3G01280.1 20706207
AT1G47220.1 Bra001415.1-P AT3G11630.1 20706207
AT1G47220.1 Bra034824.1-P AT3G11630.1 20706207
AT1G47220.1 Bra038667.1-P AT3G11630.1 20706207
AT1G47220.1 Bra025260.1-P AT3G27240.1 20706207
AT1G47220.1 Bra032991.1-P AT3G27240.1 20706207
AT1G47220.1 Bra039089.1-P AT3G27240.1 20706207
AT1G47220.1 Bra018036.1-P AT3G48750.1 20706207
AT1G47220.1 Bra029917.1-P AT3G48750.1 20706207
AT1G47220.1 Bra013108.1-P AT4G09320.1 20706207
AT1G47220.1 Bra027579.1-P AT4G09320.1 20706207
AT1G47220.1 Bra030844.1-P AT4G09320.1 20706207
AT1G47220.1 Bra011568.1-P AT4G34870.1 20706207
AT1G47220.1 Bra010508.1-P AT4G35830.1 20706207
AT1G47220.1 Bra011642.1-P AT4G35830.1 20706207
AT1G47220.1 Bra010728.1-P AT4G38740.1 20706207
AT1G47220.1 Bra006091.1-P AT5G11170.1 20706207
AT1G47220.1 Bra008983.1-P AT5G11170.1 20706207
AT1G47220.1 Bra008984.1-P AT5G11170.1 20706207
AT1G47220.1 Bra023311.1-P AT5G11170.1 20706207
AT1G47220.1 Bra023312.1-P AT5G11170.1 20706207
AT1G47220.1 Bra002236.1-P AT5G19440.1 20706207
AT1G47220.1 Bra028187.1-P AT5G38480.1 20706207
AT1G47220.1 Bra028409.1-P AT5G38480.1 20706207
AT1G47220.1 Bra022660.1-P AT5G53560.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY23653 Canola nucleus 99.72 99.72
Bra040753.1-P Field mustard nucleus, plastid 89.64 88.15
Bra040793.1-P Field mustard nucleus 88.8 87.33
AT1G47210.2 Thale cress nucleus 86.83 83.33
AT1G47220.1 Thale cress nucleus 65.27 71.25
Bra040792.1-P Field mustard nucleus, plastid 72.27 70.88
Bra033658.1-P Field mustard nucleus 70.59 70.79
Bra040710.1-P Field mustard nucleus 73.39 70.62
KRH52056 Soybean nucleus 36.41 61.61
VIT_18s0001g09580.t01 Wine grape nucleus, plastid 61.34 60.0
Solyc12g088530.1.1 Tomato nucleus 56.86 57.34
OQU91386 Sorghum nucleus 41.46 56.7
GSMUA_Achr10P... Banana nucleus 49.86 56.15
PGSC0003DMT400055428 Potato nucleus 57.14 55.43
Solyc04g078310.2.1 Tomato nucleus 57.42 55.26
KRH61375 Soybean nucleus 50.42 55.05
PGSC0003DMT400030222 Potato nucleus 54.34 54.8
KRH15427 Soybean nucleus, plastid 55.18 54.12
PGSC0003DMT400030176 Potato nucleus 53.78 53.93
KRH61369 Soybean nucleus 49.02 53.52
KRH05614 Soybean nucleus 54.9 53.41
KRH52055 Soybean nucleus 52.66 52.51
Solyc12g088520.1.1 Tomato nucleus 51.82 52.11
KRH61371 Soybean nucleus 50.7 51.86
Solyc12g088500.1.1 Tomato nucleus 50.98 51.41
Solyc12g088470.1.1 Tomato nucleus 51.54 51.11
TraesCS4D01G076900.1 Wheat nucleus 52.94 51.08
GSMUA_Achr2P21530_001 Banana cytosol, nucleus, plastid 40.62 50.7
TraesCS4B01G078300.1 Wheat nucleus 52.38 50.4
HORVU4Hr1G013320.1 Barley nucleus 52.66 50.4
TraesCS4A01G236700.2 Wheat plastid 52.38 49.87
KRH61373 Soybean nucleus, plastid 51.54 49.07
Zm00001d033365_P002 Maize nucleus 50.98 48.92
GSMUA_Achr6P11130_001 Banana nucleus 53.5 48.85
GSMUA_Achr2P21520_001 Banana nucleus 47.9 47.5
TraesCS5B01G078200.1 Wheat plastid 49.58 46.95
TraesCS5D01G084700.1 Wheat nucleus 49.58 46.83
TraesCS5A01G072000.1 Wheat plastid 49.3 46.81
Zm00001d013744_P001 Maize nucleus 45.38 45.38
Os12t0581800-01 Rice nucleus, plastid 48.46 44.94
Zm00001d030849_P001 Maize nucleus 51.26 43.26
EES16237 Sorghum nucleus, plastid 51.26 42.76
TraesCS4D01G253200.1 Wheat nucleus 28.85 42.21
Zm00001d041334_P001 Maize nucleus, plastid 50.14 40.96
TraesCS4B01G254000.1 Wheat nucleus 41.18 39.1
HORVU5Hr1G018820.2 Barley nucleus, plastid 49.58 38.99
Bra031463.1-P Field mustard nucleus 40.06 38.75
Bra000822.1-P Field mustard nucleus 40.9 38.73
TraesCS4D01G253900.1 Wheat nucleus 41.18 38.68
EER95303 Sorghum nucleus, plastid 41.18 38.58
Bra026756.1-P Field mustard plastid 43.7 38.14
TraesCS4A01G050700.1 Wheat nucleus 40.34 37.89
Bra015671.1-P Field mustard plastid 40.34 37.31
TraesCS4A01G051300.1 Wheat nucleus 35.57 37.03
TraesCS4B01G253100.1 Wheat nucleus 34.45 36.07
Bra023606.1-P Field mustard plastid 40.62 34.61
Bra022173.1-P Field mustard nucleus, plastid 36.41 34.48
Bra016654.1-P Field mustard nucleus, plastid 42.3 33.93
Bra032202.1-P Field mustard plastid 40.06 33.89
Bra003563.1-P Field mustard plastid 40.62 33.56
Bra026120.1-P Field mustard nucleus 43.42 33.26
Bra008973.1-P Field mustard nucleus, plastid 39.5 32.27
Bra008477.1-P Field mustard plastid 41.18 32.17
HORVU4Hr1G069310.3 Barley nucleus 37.25 32.05
Bra035186.1-P Field mustard plastid 40.9 31.6
Bra002046.1-P Field mustard nucleus 33.89 30.79
Os03t0607600-00 Rice nucleus 49.02 28.78
Bra005880.1-P Field mustard nucleus, plastid 33.05 28.5
Bra028741.1-P Field mustard nucleus 33.05 28.43
Bra024504.1-P Field mustard nucleus 33.33 28.4
Bra017726.1-P Field mustard nucleus 32.21 28.33
Zm00001d048127_P001 Maize plastid 37.53 27.97
Bra037265.1-P Field mustard nucleus 31.65 27.63
Bra016460.1-P Field mustard nucleus 30.81 26.83
Os03t0208700-00 Rice nucleus 30.25 26.41
Bra003727.1-P Field mustard nucleus 28.01 26.11
Bra025831.1-P Field mustard nucleus 29.69 25.85
Bra015762.1-P Field mustard nucleus 29.97 24.83
Bra011769.1-P Field mustard nucleus 29.13 24.3
Bra026065.1-P Field mustard nucleus 28.01 19.76
Bra016640.1-P Field mustard nucleus 29.13 15.88
Bra036544.1-P Field mustard nucleus 41.46 14.99
Os03t0208800-00 Rice nucleus 14.57 13.1
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.1EnsemblPlantsGene:Bra032220EnsemblPlants:Bra032220.1EnsemblPlants:Bra032220.1-PInterPro:Cyclin-A_plant
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634UniProt:M4ETT8PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF270SMART:SM00385SMART:SM01332SUPFAM:SSF47954
UniParc:UPI0002547D97SEG:seg::::
Description
AT1G47210 (E=7e-165) CYCA3;2 | cyclin family protein
Coordinates
chrA05:+:12735274..12736974
Molecular Weight (calculated)
40844.9 Da
IEP (calculated)
8.867
GRAVY (calculated)
-0.223
Length
357 amino acids
Sequence
(BLAST)
001: MMEKEICVRM TRAAAKRKAM ATEEERVTKK RVVLGELPNV ANLNQKRVIP QPTKSLVAPA KQRKTAPVES GSDIDARSDD PKMCGPYVSD IYEYLREIEV
101: KPKQRPLPDY IEKVQKDVTP SMRGVLVDWL VEVAEEYKLL SETLHLTVSY IDRFLSLKTV NKQRLQLVGV SAMLIASKYE EISPPKVEDF CYITDNTFSK
201: QDVVKMEAGI LLALQFELGR PTISSFIRRF TRVAQEDFKV PHLQLEPLAC YLSELSLLDY KAVKFVPSML AASAVFLARF IIRPKQHPWN QMLEEYTKYK
301: AADLQVCVGI IHDLYLSRRG GALQAVRDKY KHHKFECVAT MPVSPDLPVT YWEDVTI
Best Arabidopsis Sequence Match ( AT1G47210.2 )
(BLAST)
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.