Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G072000.1 | Wheat | plastid | 96.83 | 97.34 |
| TraesCS5B01G078200.1 | Wheat | plastid | 95.77 | 96.02 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 95.24 | 79.3 |
| Os12t0581800-01 | Rice | nucleus, plastid | 72.49 | 71.17 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 65.87 | 67.3 |
| Zm00001d030849_P001 | Maize | nucleus | 70.37 | 62.88 |
| EES16237 | Sorghum | nucleus, plastid | 70.63 | 62.38 |
| GSMUA_Achr10P... | Banana | nucleus | 52.12 | 62.15 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 70.11 | 60.64 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 61.64 | 59.59 |
| CDY06752 | Canola | nucleus | 44.71 | 59.3 |
| KRH52056 | Soybean | nucleus | 32.28 | 57.82 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 55.82 | 57.81 |
| KRH61375 | Soybean | nucleus | 46.56 | 53.82 |
| PGSC0003DMT400030222 | Potato | nucleus | 50.0 | 53.39 |
| CDY17091 | Canola | nucleus | 50.53 | 53.35 |
| PGSC0003DMT400055428 | Potato | nucleus | 51.85 | 53.26 |
| Solyc12g088530.1.1 | Tomato | nucleus | 49.74 | 53.11 |
| KRH15427 | Soybean | nucleus, plastid | 51.06 | 53.02 |
| KRH05614 | Soybean | nucleus | 51.32 | 52.86 |
| CDY47595 | Canola | nucleus, plastid | 51.85 | 52.83 |
| Solyc04g078310.2.1 | Tomato | nucleus | 51.85 | 52.83 |
| PGSC0003DMT400030176 | Potato | nucleus | 49.47 | 52.53 |
| CDY17037 | Canola | nucleus, plastid | 50.53 | 52.47 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 50.53 | 52.47 |
| CDY22369 | Canola | nucleus | 48.68 | 52.42 |
| Solyc12g088500.1.1 | Tomato | nucleus | 48.68 | 51.98 |
| AT5G43080.1 | Thale cress | nucleus | 48.68 | 51.83 |
| Bra033658.1-P | Field mustard | nucleus | 48.68 | 51.69 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 50.53 | 51.62 |
| Solyc12g088520.1.1 | Tomato | nucleus | 48.15 | 51.27 |
| Bra040710.1-P | Field mustard | nucleus | 50.26 | 51.21 |
| Solyc12g088470.1.1 | Tomato | nucleus | 47.88 | 50.28 |
| CDY66770 | Canola | nucleus | 48.15 | 50.28 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 32.28 | 50.0 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 44.97 | 49.85 |
| Bra032220.1-P | Field mustard | nucleus | 46.83 | 49.58 |
| Bra040793.1-P | Field mustard | nucleus | 47.35 | 49.31 |
| CDY47596 | Canola | nucleus | 47.35 | 49.31 |
| CDY23653 | Canola | nucleus | 46.56 | 49.3 |
| KRH61369 | Soybean | nucleus | 42.59 | 49.24 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 47.09 | 49.04 |
| CDY06757 | Canola | nucleus, plastid | 47.09 | 49.04 |
| CDY17039 | Canola | nucleus | 47.09 | 49.04 |
| KRH52055 | Soybean | nucleus | 46.3 | 48.88 |
| KRH61371 | Soybean | nucleus | 44.97 | 48.71 |
| AT1G47210.2 | Thale cress | nucleus | 46.56 | 47.31 |
| AT1G47220.1 | Thale cress | nucleus | 40.21 | 46.48 |
| Solyc10g049360.1.1 | Tomato | nucleus | 45.5 | 45.5 |
| PGSC0003DMT400056625 | Potato | nucleus | 45.5 | 45.26 |
| KRH61373 | Soybean | nucleus, plastid | 44.71 | 45.07 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 44.44 | 44.21 |
| TraesCS3D01G164600.1 | Wheat | plastid | 44.97 | 33.33 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 41.01 | 32.49 |
| TraesCS3D01G529100.1 | Wheat | plastid | 42.06 | 31.49 |
| TraesCS5D01G121100.2 | Wheat | plastid | 40.74 | 30.32 |
| TraesCS3D01G195200.1 | Wheat | plastid | 30.42 | 27.84 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 31.48 | 27.29 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 30.95 | 26.77 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 29.63 | 24.62 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 26.98 | 24.34 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 26.98 | 24.23 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G084700.1 | EnsemblPlantsGene:TraesCS5D01G084700 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF345 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr5D:-:88523311..88525154
Molecular Weight (calculated)
41435.7 Da
IEP (calculated)
7.366
GRAVY (calculated)
-0.219
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENAAPA AEAGPRLTRA AAKRAATCSA GPSGGAKRKR VALSELPIVS NAGVVLRQPS KPAKPAAAAK GEEERGGLSR CASTSPTPAE EEVSGGGGGS
101: ETQLSGSYAS DIYTYLRTME VEAPRRPAAD YIETVQTDVT ANMRAILIDW LVEVAEEYKL VADTLYLTVS YVDRFLSANP LGRNRLQLLG VAAMLIASKY
201: EEISPPHVED FCYITDNTYT RQELLTMESD ILKLLNFEIG SPTIKTFLRR FTRSGPEDKK RSSLLLEFMG SYLAELSLLD YSCLRFLPSV VAASSLFLAR
301: LTIGPDTNPW GKEMHKLTGY KASELKDCII AIHDLQLNRK GQSLPAIRDK YKQHRFKCVS MLLPPVEIPA SYFQDLTE
101: ETQLSGSYAS DIYTYLRTME VEAPRRPAAD YIETVQTDVT ANMRAILIDW LVEVAEEYKL VADTLYLTVS YVDRFLSANP LGRNRLQLLG VAAMLIASKY
201: EEISPPHVED FCYITDNTYT RQELLTMESD ILKLLNFEIG SPTIKTFLRR FTRSGPEDKK RSSLLLEFMG SYLAELSLLD YSCLRFLPSV VAASSLFLAR
301: LTIGPDTNPW GKEMHKLTGY KASELKDCII AIHDLQLNRK GQSLPAIRDK YKQHRFKCVS MLLPPVEIPA SYFQDLTE
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.