Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 97.25 | 97.25 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 96.56 | 96.56 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 91.06 | 90.85 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 89.91 | 88.49 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 89.91 | 88.49 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 64.22 | 87.5 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 81.19 | 84.29 |
| HORVU1Hr1G068080.1 | Barley | plastid | 65.37 | 83.33 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 82.57 | 82.19 |
| Zm00001d010656_P001 | Maize | nucleus | 62.16 | 60.76 |
| EES18429 | Sorghum | mitochondrion | 63.99 | 60.65 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 62.16 | 59.56 |
| Os05t0493500-00 | Rice | nucleus | 62.61 | 56.06 |
| PGSC0003DMT400058457 | Potato | nucleus | 50.0 | 52.15 |
| Solyc01g009040.2.1 | Tomato | nucleus | 50.92 | 51.03 |
| CDY69551 | Canola | nucleus | 41.51 | 50.99 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 23.17 | 50.75 |
| CDY62475 | Canola | nucleus | 40.83 | 50.71 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 51.61 | 49.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.49 | 48.99 |
| KRH14611 | Soybean | nucleus | 49.31 | 48.97 |
| Bra002046.1-P | Field mustard | nucleus | 44.04 | 48.85 |
| PGSC0003DMT400015245 | Potato | nucleus | 49.08 | 48.75 |
| Bra028741.1-P | Field mustard | nucleus | 46.33 | 48.67 |
| KRH73516 | Soybean | nucleus | 49.08 | 48.64 |
| KRG95055 | Soybean | nucleus | 50.23 | 48.13 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 46.1 | 48.09 |
| AT3G11520.1 | Thale cress | nucleus | 45.64 | 48.07 |
| Solyc06g073610.2.1 | Tomato | nucleus | 48.39 | 47.95 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 45.41 | 47.83 |
| AT2G26760.1 | Thale cress | nucleus | 42.43 | 47.8 |
| KRH66713 | Soybean | nucleus | 49.77 | 47.8 |
| KRH66715 | Soybean | nucleus | 42.89 | 47.7 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 50.46 | 47.62 |
| PGSC0003DMT400018480 | Potato | nucleus | 46.1 | 47.29 |
| CDX80988 | Canola | plastid | 46.33 | 47.2 |
| Solyc10g078330.1.1 | Tomato | nucleus | 45.18 | 46.57 |
| CDY11354 | Canola | plastid | 46.1 | 46.42 |
| Solyc10g080950.1.1 | Tomato | nucleus | 48.85 | 46.1 |
| PGSC0003DMT400072211 | Potato | nucleus | 48.85 | 45.91 |
| AT5G06150.1 | Thale cress | nucleus | 46.1 | 45.17 |
| TraesCS3D01G195200.1 | Wheat | plastid | 42.43 | 44.79 |
| AT4G37490.1 | Thale cress | nucleus | 43.58 | 44.39 |
| KRH66718 | Soybean | plastid | 37.61 | 43.97 |
| CDX69311 | Canola | nucleus | 42.2 | 43.91 |
| CDX75659 | Canola | nucleus | 42.43 | 43.22 |
| Bra011769.1-P | Field mustard | nucleus | 42.43 | 43.22 |
| KRG95056 | Soybean | cytosol | 36.93 | 41.6 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 34.17 | 35.56 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 33.72 | 34.92 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 29.13 | 34.32 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 17.89 | 31.97 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 27.29 | 31.48 |
| CDY14091 | Canola | plastid | 46.33 | 30.79 |
| AT1G34460.5 | Thale cress | cytosol | 33.03 | 28.92 |
| CDY04980 | Canola | nucleus | 46.1 | 27.99 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 22.71 | 26.05 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 28.44 | 26.0 |
| TraesCS3D01G529100.1 | Wheat | plastid | 29.13 | 25.15 |
| TraesCS3D01G164600.1 | Wheat | plastid | 29.36 | 25.1 |
| TraesCS5D01G121100.2 | Wheat | plastid | 29.13 | 25.0 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G309300.1 | EnsemblPlantsGene:TraesCS1D01G309300 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : |
Description
No Description!
Coordinates
chr1D:+:405164259..405166509
Molecular Weight (calculated)
47868.9 Da
IEP (calculated)
9.944
GRAVY (calculated)
-0.240
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRHNQQNA AAAPQPAANR GAAGKQKGAA AGRPAAGGNR RALGDIGNVV HAHVLDGKIQ LPAGINRPIT RSFGAQLLKK AQAEPSKNGV AVPPAARAAP
101: KPVAKKVPVK PAAVPRPEPA AAKIVTGSDE TRKPSEVSAP KTSRKKVVHT LTTVLNHRSK EASIDDIDKL DGDNELAVVD YIDDIYKYYK EAQHEWRPID
201: YMGSQTEVNP KMRAILTDWL VEVTHKFELM PESMYLTIYV IDRFLSLQAV PRRELQLVGI AAMLIACKYE EIWAPEVNDF ISIADNSYSR QQILSMEKNI
301: LNSMAWNLTV PTPYVFLVRF AKAAGSDKEL ENMIFFFAEL ALMEYGLVTV RPSLVAASAV YAARCTLKRS PIWTETLKHH TGFSEPQLLE PAKMLVMAHA
401: AAPDSKLKAI YKKYSCEQYG RVSLRAPAVA APQRQA
101: KPVAKKVPVK PAAVPRPEPA AAKIVTGSDE TRKPSEVSAP KTSRKKVVHT LTTVLNHRSK EASIDDIDKL DGDNELAVVD YIDDIYKYYK EAQHEWRPID
201: YMGSQTEVNP KMRAILTDWL VEVTHKFELM PESMYLTIYV IDRFLSLQAV PRRELQLVGI AAMLIACKYE EIWAPEVNDF ISIADNSYSR QQILSMEKNI
301: LNSMAWNLTV PTPYVFLVRF AKAAGSDKEL ENMIFFFAEL ALMEYGLVTV RPSLVAASAV YAARCTLKRS PIWTETLKHH TGFSEPQLLE PAKMLVMAHA
401: AAPDSKLKAI YKKYSCEQYG RVSLRAPAVA APQRQA
001: MATGPVVHPQ PVRGDPIDLK NAAAKNRRAL GDIGNVDSLI GVEGGKLNRP ITRNFRAQLL ENAQVAAAAN KKAPILDGVT KKQEVVRAVQ KKARGDKREP
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMDCS KLLAFIHSKA GESKLRGVLK KYSKLGRGAV
401: ALISPAKSLM SSAP
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMDCS KLLAFIHSKA GESKLRGVLK KYSKLGRGAV
401: ALISPAKSLM SSAP
Arabidopsis Description
CYCB1-3Cyclin-B1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q39069]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.