Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G217300.1 | Wheat | cytosol | 30.49 | 54.63 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 42.38 | 51.25 |
| Zm00001d019469_P001 | Maize | extracellular | 18.86 | 51.05 |
| HORVU1Hr1G068080.1 | Barley | plastid | 42.64 | 48.25 |
| AT3G11520.1 | Thale cress | nucleus | 51.42 | 48.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.95 | 47.99 |
| KXG24389 | Sorghum | nucleus | 30.49 | 46.83 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 47.8 | 46.02 |
| AT4G37490.1 | Thale cress | nucleus | 50.39 | 45.56 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 49.87 | 45.41 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 47.29 | 43.57 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 51.42 | 43.54 |
| EES03772 | Sorghum | nucleus, plastid | 50.39 | 43.43 |
| GSMUA_Achr10P... | Banana | nucleus | 50.13 | 42.83 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 48.06 | 42.66 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 49.35 | 42.54 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 47.8 | 42.43 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 50.39 | 42.3 |
| AT5G06150.1 | Thale cress | nucleus | 48.58 | 42.25 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 47.8 | 42.24 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 49.35 | 42.16 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 47.55 | 42.11 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 49.35 | 41.98 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 47.29 | 41.97 |
| Os01t0281200-01 | Rice | nucleus | 45.74 | 41.84 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 49.61 | 41.74 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 47.29 | 41.31 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 47.29 | 41.31 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 46.51 | 41.28 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 45.48 | 40.46 |
| Zm00001d043164_P002 | Maize | nucleus | 49.87 | 39.88 |
| TraesCS3D01G195200.1 | Wheat | plastid | 41.6 | 38.98 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 33.07 | 38.91 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 41.34 | 38.65 |
| Zm00001d010656_P001 | Maize | nucleus | 44.44 | 38.56 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 37.73 | 36.87 |
| EES18429 | Sorghum | mitochondrion | 43.67 | 36.74 |
| EES02793 | Sorghum | nucleus | 43.41 | 36.29 |
| Zm00001d008221_P001 | Maize | nucleus | 43.15 | 34.86 |
| Os05t0493500-00 | Rice | nucleus | 42.64 | 33.88 |
| AT4G35620.1 | Thale cress | nucleus | 36.95 | 33.33 |
| AT2G17620.1 | Thale cress | nucleus | 36.95 | 33.33 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 42.12 | 33.13 |
| AT1G47220.1 | Thale cress | nucleus | 27.39 | 32.42 |
| AT1G20610.1 | Thale cress | nucleus | 34.63 | 31.24 |
| AT5G43080.1 | Thale cress | nucleus | 28.42 | 30.99 |
| Zm00001d020033_P001 | Maize | nucleus | 41.86 | 29.78 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 28.17 | 29.46 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 20.16 | 29.43 |
| AT1G76310.3 | Thale cress | nucleus | 34.88 | 29.41 |
| AT1G47210.2 | Thale cress | nucleus | 28.17 | 29.3 |
| Zm00001d020996_P001 | Maize | nucleus | 41.09 | 29.23 |
| AT1G77390.1 | Thale cress | plastid | 31.52 | 27.6 |
| AT5G11300.1 | Thale cress | plastid | 30.49 | 27.06 |
| AT1G44110.1 | Thale cress | plastid | 32.04 | 26.96 |
| AT5G25380.4 | Thale cress | plastid | 30.75 | 26.86 |
| AT1G80370.1 | Thale cress | plastid | 29.97 | 25.16 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 29.2 | 25.11 |
| AT1G34460.5 | Thale cress | cytosol | 32.3 | 25.1 |
| AT1G16330.1 | Thale cress | nucleus | 35.66 | 21.3 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | EntrezGene:817217 | UniProt:A0A178VPU5 | ProteinID:AAB95310.1 | ProteinID:AEC07883.1 |
| ArrayExpress:AT2G26760 | EnsemblPlantsGene:AT2G26760 | RefSeq:AT2G26760 | TAIR:AT2G26760 | RefSeq:AT2G26760-TAIR-G | EnsemblPlants:AT2G26760.1 |
| TAIR:AT2G26760.1 | EMBL:AY050781 | EMBL:BT015043 | Symbol:CYCB1;4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051301 | RefSeq:NP_180244.1 | UniProt:O48790 | ProteinID:OAP08520.1 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF352 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00000A37F9 | SEG:seg | : |
Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
Coordinates
chr2:+:11401118..11403433
Molecular Weight (calculated)
43573.8 Da
IEP (calculated)
7.587
GRAVY (calculated)
-0.184
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.