Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G333000.2 | Wheat | nucleus | 97.4 | 97.61 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 96.31 | 97.58 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 92.19 | 93.82 |
| TraesCSU01G217300.1 | Wheat | cytosol | 33.84 | 72.22 |
| EES03772 | Sorghum | nucleus, plastid | 66.16 | 67.93 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 64.86 | 66.59 |
| KXG24389 | Sorghum | nucleus | 34.27 | 62.7 |
| Zm00001d043164_P002 | Maize | nucleus | 65.29 | 62.19 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 58.35 | 61.7 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 55.1 | 58.26 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 40.13 | 56.23 |
| PGSC0003DMT400058457 | Potato | nucleus | 49.24 | 54.31 |
| Solyc01g009040.2.1 | Tomato | nucleus | 50.33 | 53.33 |
| CDY69551 | Canola | nucleus | 40.78 | 52.96 |
| CDY62475 | Canola | nucleus | 39.91 | 52.42 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 51.41 | 52.32 |
| Bra002046.1-P | Field mustard | nucleus | 44.03 | 51.65 |
| KRG95055 | Soybean | nucleus | 50.76 | 51.43 |
| AT3G11520.1 | Thale cress | nucleus | 45.99 | 51.21 |
| Bra028741.1-P | Field mustard | nucleus | 45.77 | 50.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.75 | 50.67 |
| Solyc10g080950.1.1 | Tomato | nucleus | 50.76 | 50.65 |
| AT2G26760.1 | Thale cress | nucleus | 42.3 | 50.39 |
| PGSC0003DMT400015245 | Potato | nucleus | 47.94 | 50.34 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 21.69 | 50.25 |
| PGSC0003DMT400072211 | Potato | nucleus | 50.33 | 50.0 |
| PGSC0003DMT400018480 | Potato | nucleus | 45.99 | 49.88 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 45.12 | 49.76 |
| Solyc10g078330.1.1 | Tomato | nucleus | 45.55 | 49.65 |
| KRH14611 | Soybean | nucleus | 47.07 | 49.43 |
| KRH66713 | Soybean | nucleus | 48.59 | 49.34 |
| KRH73516 | Soybean | nucleus | 47.07 | 49.32 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 49.24 | 49.13 |
| Solyc06g073610.2.1 | Tomato | nucleus | 46.64 | 48.86 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 43.82 | 48.79 |
| KRH66715 | Soybean | nucleus | 41.43 | 48.72 |
| CDY11354 | Canola | plastid | 44.69 | 47.58 |
| CDX80988 | Canola | plastid | 43.82 | 47.2 |
| AT5G06150.1 | Thale cress | nucleus | 45.12 | 46.74 |
| AT4G37490.1 | Thale cress | nucleus | 43.17 | 46.5 |
| CDX69311 | Canola | nucleus | 41.65 | 45.82 |
| Bra011769.1-P | Field mustard | nucleus | 42.3 | 45.56 |
| CDX75659 | Canola | nucleus | 42.3 | 45.56 |
| KRH66718 | Soybean | plastid | 36.23 | 44.77 |
| KRG95056 | Soybean | cytosol | 36.23 | 43.15 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 34.71 | 38.19 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 33.62 | 37.9 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 26.03 | 32.34 |
| CDY14091 | Canola | plastid | 45.77 | 32.16 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 23.64 | 30.7 |
| TraesCS5B01G078200.1 | Wheat | plastid | 24.3 | 29.71 |
| CDY04980 | Canola | nucleus | 45.99 | 29.53 |
| AT1G34460.5 | Thale cress | cytosol | 31.24 | 28.92 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 22.13 | 27.13 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 19.74 | 26.69 |
| TraesCS5B01G114300.2 | Wheat | plastid | 27.55 | 25.05 |
| TraesCS3B01G183400.1 | Wheat | plastid | 27.33 | 24.71 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G363200.3 | EnsemblPlantsGene:TraesCS3B01G363200 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF343 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : | : |
Description
No Description!
Coordinates
chr3B:-:574681076..574683624
Molecular Weight (calculated)
50984.4 Da
IEP (calculated)
9.645
GRAVY (calculated)
-0.297
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARAHNNVA AAQQQNRALG GGGGGGVPAM GKQQKAAMAG RPDPKNTRRA LGDIGNFEAN NRRAPLGDIA NVVNVRAAEG NRKPQPHEPV NRPVTRNFGA
101: QLLKNAQEKA KNPVARPAVR RAHHVKPAPP PPEHVIEISS DSDVTKSEAG SVSSVRKYSR KKVVTTLSHV LSARSKFAAG ITEEPAIQDI DKLDGDNQLA
201: VVDYIEDIYK FYKVAENECR AKDYMDSQVE INAKMRGILI DWILEVHQKF DLMPESLYLT VYIIDMYLSL QTVLRRELQL VGVSALLIAC KYEEIWAPEV
301: NDFILISDSA YTREQILKME KAILNMLEWN LTVPTPYVFL VRFAKAASSS DQKNDKEMEN TVFFFAELAL LQYGLVQSKP SMVAAAAVYA ARLTLKKTPL
401: WTDTLKHHTG FTEAQLMEAA KILVASHSTA PDSKLKVVYK KYSSEKLGGV ALRPPATDFC K
101: QLLKNAQEKA KNPVARPAVR RAHHVKPAPP PPEHVIEISS DSDVTKSEAG SVSSVRKYSR KKVVTTLSHV LSARSKFAAG ITEEPAIQDI DKLDGDNQLA
201: VVDYIEDIYK FYKVAENECR AKDYMDSQVE INAKMRGILI DWILEVHQKF DLMPESLYLT VYIIDMYLSL QTVLRRELQL VGVSALLIAC KYEEIWAPEV
301: NDFILISDSA YTREQILKME KAILNMLEWN LTVPTPYVFL VRFAKAASSS DQKNDKEMEN TVFFFAELAL LQYGLVQSKP SMVAAAAVYA ARLTLKKTPL
401: WTDTLKHHTG FTEAQLMEAA KILVASHSTA PDSKLKVVYK KYSSEKLGGV ALRPPATDFC K
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.