Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G309400.1 | Wheat | nucleus | 94.5 | 94.28 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 89.68 | 89.68 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 63.99 | 87.19 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 84.4 | 83.07 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 84.4 | 83.07 |
| HORVU1Hr1G068080.1 | Barley | plastid | 65.14 | 83.04 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 78.9 | 81.9 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 80.28 | 79.91 |
| Zm00001d010656_P001 | Maize | nucleus | 59.63 | 58.3 |
| EES18429 | Sorghum | mitochondrion | 60.78 | 57.61 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 58.26 | 55.1 |
| Os05t0493500-00 | Rice | nucleus | 60.55 | 54.21 |
| PGSC0003DMT400058457 | Potato | nucleus | 48.39 | 50.48 |
| Solyc01g009040.2.1 | Tomato | nucleus | 49.31 | 49.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.03 | 48.32 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 50.0 | 48.12 |
| CDY69551 | Canola | nucleus | 38.99 | 47.89 |
| CDY62475 | Canola | nucleus | 38.07 | 47.29 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 21.33 | 46.73 |
| PGSC0003DMT400015245 | Potato | nucleus | 47.02 | 46.7 |
| KRH66715 | Soybean | nucleus | 41.97 | 46.68 |
| AT3G11520.1 | Thale cress | nucleus | 44.27 | 46.62 |
| AT2G26760.1 | Thale cress | nucleus | 41.28 | 46.51 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 44.5 | 46.41 |
| KRH14611 | Soybean | nucleus | 46.56 | 46.24 |
| KRG95055 | Soybean | nucleus | 48.17 | 46.15 |
| Solyc06g073610.2.1 | Tomato | nucleus | 46.56 | 46.14 |
| PGSC0003DMT400018480 | Potato | nucleus | 44.95 | 46.12 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 48.85 | 46.1 |
| KRH66713 | Soybean | nucleus | 47.94 | 46.04 |
| Bra028741.1-P | Field mustard | nucleus | 43.81 | 46.02 |
| KRH73516 | Soybean | nucleus | 46.33 | 45.91 |
| Solyc10g080950.1.1 | Tomato | nucleus | 48.39 | 45.67 |
| Bra002046.1-P | Field mustard | nucleus | 41.05 | 45.55 |
| PGSC0003DMT400072211 | Potato | nucleus | 48.39 | 45.47 |
| Solyc10g078330.1.1 | Tomato | nucleus | 44.04 | 45.39 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 42.43 | 44.69 |
| CDX80988 | Canola | plastid | 43.35 | 44.16 |
| AT4G37490.1 | Thale cress | nucleus | 43.35 | 44.16 |
| CDX69311 | Canola | nucleus | 42.2 | 43.91 |
| CDY11354 | Canola | plastid | 43.35 | 43.65 |
| CDX75659 | Canola | nucleus | 42.43 | 43.22 |
| Bra011769.1-P | Field mustard | nucleus | 42.2 | 42.99 |
| AT5G06150.1 | Thale cress | nucleus | 43.58 | 42.7 |
| KRH66718 | Soybean | plastid | 36.01 | 42.09 |
| KRG95056 | Soybean | cytosol | 35.09 | 39.53 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 33.03 | 35.21 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 33.72 | 35.08 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 27.06 | 31.81 |
| TraesCS5B01G078200.1 | Wheat | plastid | 26.38 | 30.5 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 24.31 | 29.86 |
| CDY14091 | Canola | plastid | 43.81 | 29.12 |
| AT1G34460.5 | Thale cress | cytosol | 31.88 | 27.91 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 23.39 | 27.13 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 20.87 | 26.69 |
| CDY04980 | Canola | nucleus | 43.35 | 26.32 |
| TraesCS3B01G183400.1 | Wheat | plastid | 28.67 | 24.51 |
| TraesCS5B01G114300.2 | Wheat | plastid | 27.98 | 24.06 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G321000.1 | EnsemblPlantsGene:TraesCS1B01G321000 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : |
Description
No Description!
Coordinates
chr1B:+:545162141..545164506
Molecular Weight (calculated)
47979.3 Da
IEP (calculated)
9.689
GRAVY (calculated)
-0.206
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRQDQHAA AAPQPANRGA AVPAGQQKDA AAAGGRPGAG GNRRVLGDIG NVVHAHAHVL DGKINRPITR SFGAQLLRKA QADPSKNGVA VPPAERAGLK
101: PVAKKVPVKL KPAAPRPKPA AKIVTGPGEN RKPSEVAAGC SAPRKKVVHT LTTVLNHRSK EASIDDIDKL DGDNELAVVD YIDDIYRYYK EAQHECRPID
201: YMGSQPEINP KMRAILIDWL VEVTHKFELM PESMFLTMYV IDRFLSLQAV PRRELQLVGM AAMLISCKYE EIWAPEVDDF ISIADYSYSR QQILSMEKNI
301: LNSMAWNLTV PTPYVFLVRF AKAAGSDKEL EHMIFFFAEM ALMEYGLVTV RPSLVAAFAV YAARCTLKRS PIWTETLKHH TGFAEPQLLE PAKVLVMAHA
401: AAPECKLKAI YKKYSSEQYG RVSLRPPAVA APQRLA
101: PVAKKVPVKL KPAAPRPKPA AKIVTGPGEN RKPSEVAAGC SAPRKKVVHT LTTVLNHRSK EASIDDIDKL DGDNELAVVD YIDDIYRYYK EAQHECRPID
201: YMGSQPEINP KMRAILIDWL VEVTHKFELM PESMFLTMYV IDRFLSLQAV PRRELQLVGM AAMLISCKYE EIWAPEVDDF ISIADYSYSR QQILSMEKNI
301: LNSMAWNLTV PTPYVFLVRF AKAAGSDKEL EHMIFFFAEM ALMEYGLVTV RPSLVAAFAV YAARCTLKRS PIWTETLKHH TGFAEPQLLE PAKVLVMAHA
401: AAPECKLKAI YKKYSSEQYG RVSLRPPAVA APQRLA
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.