Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078330.1.1 | Tomato | nucleus | 95.76 | 96.22 |
| PGSC0003DMT400072211 | Potato | nucleus | 75.76 | 69.4 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 66.82 | 62.69 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 66.12 | 60.82 |
| KRG95055 | Soybean | nucleus | 64.24 | 60.0 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 28.0 | 59.8 |
| KRH66713 | Soybean | nucleus | 62.82 | 58.81 |
| TraesCSU01G217300.1 | Wheat | cytosol | 29.88 | 58.8 |
| KRH66715 | Soybean | nucleus | 53.18 | 57.65 |
| PGSC0003DMT400058457 | Potato | nucleus | 56.47 | 57.42 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 42.35 | 56.25 |
| PGSC0003DMT400015245 | Potato | nucleus | 57.88 | 56.04 |
| KRH66718 | Soybean | plastid | 48.71 | 55.5 |
| Zm00001d019469_P001 | Maize | extracellular | 18.59 | 55.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.88 | 54.03 |
| HORVU1Hr1G068080.1 | Barley | plastid | 42.82 | 53.22 |
| CDY69551 | Canola | nucleus | 44.24 | 52.96 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 56.94 | 52.95 |
| AT4G37490.1 | Thale cress | nucleus | 53.18 | 52.8 |
| Bra002046.1-P | Field mustard | nucleus | 48.71 | 52.67 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 52.24 | 52.24 |
| CDY62475 | Canola | nucleus | 42.82 | 51.85 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 52.94 | 51.72 |
| CDX69311 | Canola | nucleus | 50.82 | 51.55 |
| GSMUA_Achr10P... | Banana | nucleus | 54.59 | 51.21 |
| Bra011769.1-P | Field mustard | nucleus | 51.29 | 50.93 |
| CDX75659 | Canola | nucleus | 51.29 | 50.93 |
| KRG95056 | Soybean | cytosol | 46.35 | 50.9 |
| KXG24389 | Sorghum | nucleus | 30.12 | 50.79 |
| AT3G11520.1 | Thale cress | nucleus | 49.41 | 50.72 |
| Bra028741.1-P | Field mustard | nucleus | 49.41 | 50.6 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 47.06 | 49.75 |
| EES03772 | Sorghum | nucleus, plastid | 52.24 | 49.44 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 51.76 | 49.0 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 47.53 | 48.79 |
| AT5G06150.1 | Thale cress | nucleus | 50.12 | 47.87 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 47.06 | 47.62 |
| CDX80988 | Canola | plastid | 47.76 | 47.43 |
| CDY11354 | Canola | plastid | 48.24 | 47.34 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 49.65 | 46.37 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 49.18 | 46.14 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 47.29 | 46.1 |
| PGSC0003DMT400075380 | Potato | nucleus | 25.65 | 45.99 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 49.88 | 45.99 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 47.29 | 45.89 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 49.65 | 45.87 |
| Zm00001d043164_P002 | Maize | nucleus | 52.0 | 45.66 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 46.82 | 45.64 |
| TraesCS3D01G195200.1 | Wheat | plastid | 44.24 | 45.52 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 46.59 | 45.41 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 44.24 | 45.41 |
| Os01t0281200-01 | Rice | nucleus | 45.18 | 45.39 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 46.59 | 45.31 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 46.12 | 44.95 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 45.88 | 44.02 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 45.88 | 44.02 |
| Zm00001d010656_P001 | Maize | nucleus | 44.47 | 42.38 |
| EES18429 | Sorghum | mitochondrion | 44.94 | 41.52 |
| EES02793 | Sorghum | nucleus | 43.53 | 39.96 |
| Os05t0493500-00 | Rice | nucleus | 45.41 | 39.63 |
| Zm00001d008221_P001 | Maize | nucleus | 43.76 | 38.83 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 29.65 | 38.3 |
| PGSC0003DMT400093973 | Potato | nucleus | 29.65 | 38.18 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 35.29 | 37.88 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 42.82 | 36.99 |
| PGSC0003DMT400048062 | Potato | nucleus | 35.53 | 35.03 |
| PGSC0003DMT400003868 | Potato | nucleus | 35.53 | 34.87 |
| PGSC0003DMT400025854 | Potato | nucleus | 35.29 | 34.01 |
| Zm00001d020033_P001 | Maize | nucleus | 43.06 | 33.64 |
| Zm00001d020996_P001 | Maize | nucleus | 41.88 | 32.72 |
| CDY14091 | Canola | plastid | 49.41 | 32.01 |
| PGSC0003DMT400055428 | Potato | nucleus | 25.65 | 29.62 |
| PGSC0003DMT400030222 | Potato | nucleus | 24.47 | 29.38 |
| AT1G34460.5 | Thale cress | cytosol | 34.12 | 29.12 |
| CDY04980 | Canola | nucleus | 49.18 | 29.11 |
| PGSC0003DMT400030176 | Potato | nucleus | 23.76 | 28.37 |
| PGSC0003DMT400056625 | Potato | nucleus | 24.0 | 26.84 |
| PGSC0003DMT400015424 | Potato | plastid | 28.0 | 25.21 |
| PGSC0003DMT400067117 | Potato | plastid | 28.0 | 23.94 |
| PGSC0003DMT400006576 | Potato | nucleus | 25.65 | 23.54 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102581949 | MapMan:13.1.1.1.2 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:M1AAQ1 |
| PFAM:PF00134 | PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400007172 | PGSC:PGSC0003DMG400007172 | EnsemblPlants:PGSC0003DMT400018480 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF352 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI000295E741 | RefSeq:XP_006364788.1 | SEG:seg | : | : | : |
Description
B-type cyclin [Source:PGSC_GENE;Acc:PGSC0003DMG400007172]
Coordinates
chr10:+:59413441..59416694
Molecular Weight (calculated)
47494.6 Da
IEP (calculated)
9.422
GRAVY (calculated)
-0.249
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRNVLQHQ NKGEVVVPGV VKQKKNMVAE GRNRKALGDI GNLATGRGVE GKPLPQKSVA VNVKVANVAN GAQKVPVGRK PAQKKATVKP KPEEIIEISP
101: DTREKLMEKK MLRKKQAAED ITKKKSTLTS TLTARSKAAC GLSKKPKEQI VDIDAADVNN ELAVLEYVED IYNFYKLAES ETRVHDYIDS QPEISEKMRA
201: ILIDWLIEVH HKFELNPETL YLTINIVDRY LAVEFSSRRE LQLVGISAML IASKYEEIWA PEVNDFVGIA DKTYSHDQVL AMEKQILGKL EWYLTVPTPY
301: VFLVRFIKAS LPDSEMENMV YFLAELGLMN YATVIYCPSM IAASAVYAAR HTLNRTPFWN GTLKLHTGFS ESQVIECARQ LVSYHSEAAN HKLKVIYKKY
401: SNSERGAVAL LPPAKSLLAA SSPSC
101: DTREKLMEKK MLRKKQAAED ITKKKSTLTS TLTARSKAAC GLSKKPKEQI VDIDAADVNN ELAVLEYVED IYNFYKLAES ETRVHDYIDS QPEISEKMRA
201: ILIDWLIEVH HKFELNPETL YLTINIVDRY LAVEFSSRRE LQLVGISAML IASKYEEIWA PEVNDFVGIA DKTYSHDQVL AMEKQILGKL EWYLTVPTPY
301: VFLVRFIKAS LPDSEMENMV YFLAELGLMN YATVIYCPSM IAASAVYAAR HTLNRTPFWN GTLKLHTGFS ESQVIECARQ LVSYHSEAAN HKLKVIYKKY
401: SNSERGAVAL LPPAKSLLAA SSPSC
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.