Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- endoplasmic reticulum 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030176 | Potato | nucleus | 92.94 | 92.42 |
| Solyc12g088500.1.1 | Tomato | nucleus | 91.53 | 91.53 |
| Solyc12g088470.1.1 | Tomato | nucleus | 92.94 | 91.39 |
| PGSC0003DMT400055428 | Potato | nucleus | 75.99 | 73.1 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 70.9 | 68.77 |
| KRH52056 | Soybean | nucleus | 38.14 | 63.98 |
| OQU91386 | Sorghum | nucleus | 45.48 | 61.69 |
| CDY06752 | Canola | nucleus | 48.87 | 60.7 |
| GSMUA_Achr10P... | Banana | nucleus | 53.11 | 59.31 |
| CDY22369 | Canola | nucleus | 58.47 | 58.97 |
| Bra033658.1-P | Field mustard | nucleus | 58.19 | 57.87 |
| KRH15427 | Soybean | nucleus, plastid | 59.32 | 57.69 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 59.32 | 56.76 |
| CDY66770 | Canola | nucleus | 57.91 | 56.63 |
| KRH05614 | Soybean | nucleus | 58.47 | 56.4 |
| AT5G43080.1 | Thale cress | nucleus | 56.5 | 56.34 |
| CDY17091 | Canola | nucleus | 56.78 | 56.15 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 57.34 | 55.92 |
| CDY06757 | Canola | nucleus, plastid | 57.34 | 55.92 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 58.47 | 55.8 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 58.76 | 55.76 |
| AT1G47210.2 | Thale cress | nucleus | 58.19 | 55.38 |
| KRH61375 | Soybean | nucleus | 51.13 | 55.35 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 44.63 | 55.24 |
| TraesCS4A01G236700.2 | Wheat | plastid | 58.47 | 55.2 |
| CDY47596 | Canola | nucleus | 56.21 | 54.82 |
| Bra040793.1-P | Field mustard | nucleus | 55.93 | 54.55 |
| Bra032220.1-P | Field mustard | nucleus | 54.8 | 54.34 |
| CDY17039 | Canola | nucleus | 55.65 | 54.27 |
| CDY23653 | Canola | nucleus | 54.52 | 54.06 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 56.5 | 54.05 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 59.6 | 53.96 |
| Bra040710.1-P | Field mustard | nucleus | 56.21 | 53.64 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 55.08 | 53.57 |
| CDY17037 | Canola | nucleus, plastid | 55.08 | 53.57 |
| CDY47595 | Canola | nucleus, plastid | 55.93 | 53.37 |
| KRH61371 | Soybean | nucleus | 52.54 | 53.3 |
| KRH61369 | Soybean | nucleus | 49.15 | 53.21 |
| KRH52055 | Soybean | nucleus | 53.39 | 52.79 |
| Zm00001d033365_P002 | Maize | nucleus | 53.11 | 50.54 |
| Zm00001d013744_P001 | Maize | nucleus | 50.85 | 50.42 |
| TraesCS5B01G078200.1 | Wheat | plastid | 53.67 | 50.4 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 51.13 | 50.28 |
| KRH61373 | Soybean | nucleus, plastid | 53.11 | 50.13 |
| TraesCS5A01G072000.1 | Wheat | plastid | 53.11 | 50.0 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 53.39 | 50.0 |
| Os12t0581800-01 | Rice | nucleus, plastid | 54.24 | 49.87 |
| AT1G47220.1 | Thale cress | nucleus | 45.76 | 49.54 |
| PGSC0003DMT400056625 | Potato | nucleus | 53.11 | 49.47 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 32.2 | 46.72 |
| Zm00001d030849_P001 | Maize | nucleus | 55.37 | 46.34 |
| EES16237 | Sorghum | nucleus, plastid | 55.93 | 46.26 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 53.67 | 43.48 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 45.2 | 42.55 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 53.39 | 41.63 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 44.63 | 41.58 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 43.79 | 40.79 |
| EER95303 | Sorghum | nucleus, plastid | 42.66 | 39.63 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 37.85 | 39.07 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 37.57 | 39.0 |
| PGSC0003DMT400075380 | Potato | nucleus | 25.42 | 37.97 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 44.07 | 37.59 |
| PGSC0003DMT400015424 | Potato | plastid | 43.22 | 32.42 |
| PGSC0003DMT400093973 | Potato | nucleus | 29.94 | 32.12 |
| PGSC0003DMT400006576 | Potato | nucleus | 41.81 | 31.97 |
| PGSC0003DMT400067117 | Potato | plastid | 44.07 | 31.39 |
| Os03t0607600-00 | Rice | nucleus | 51.41 | 29.93 |
| Os03t0208700-00 | Rice | nucleus | 33.9 | 29.34 |
| Zm00001d048127_P001 | Maize | plastid | 39.55 | 29.23 |
| PGSC0003DMT400048062 | Potato | nucleus | 31.36 | 25.75 |
| PGSC0003DMT400058457 | Potato | nucleus | 29.66 | 25.12 |
| PGSC0003DMT400025854 | Potato | nucleus | 31.07 | 24.94 |
| PGSC0003DMT400003868 | Potato | nucleus | 30.51 | 24.94 |
| PGSC0003DMT400018480 | Potato | nucleus | 29.38 | 24.47 |
| PGSC0003DMT400015245 | Potato | nucleus | 29.94 | 24.15 |
| PGSC0003DMT400072211 | Potato | nucleus | 27.97 | 21.34 |
| Os03t0208800-00 | Rice | nucleus | 18.08 | 16.12 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102586353 | MapMan:13.1.1.1.1 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| UniProt:M1ATW8 | PFAM:PF00134 | PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400011563 | PGSC:PGSC0003DMG400011563 | EnsemblPlants:PGSC0003DMT400030222 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI000295474C | RefSeq:XP_006342653.1 | : | : | : |
Description
Cyclin A [Source:PGSC_GENE;Acc:PGSC0003DMG400011563]
Coordinates
chr12:-:56319137..56320883
Molecular Weight (calculated)
40836.7 Da
IEP (calculated)
8.657
GRAVY (calculated)
-0.298
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQENVVRV TRLAKKRAAE TMVQHLQQPN KKRVVLSEIQ DLSNVGINQI EDKVFVSEPL RPKCKQITKR KMKSSDDPQM CSAYVSDIYD YLHQMEIEKK
101: RRPLPDYLEK VQKDVSANMR GVLVDWLVEV TDEYKLLSDT LYLTVSYIDR FLSVNVIPRQ KLQLLGVSSM LIAAKYEEIS PPDVGEFCYI TDNTYSKKEM
201: VKMEAEVLKC LNFEMGNPTI KTFLGRFTKI AQEDYKKNNL QLEFLGYYLA ELSLLDYNCV KFLPSLVAAA VIFLSRFTLQ PKSHPWSLAL QRCSGYRPGD
301: LKECVLIIHD LQLSRRGSAL SAVRDKYKLH KFKCVSTLSS PLEIPDSFFE DTRQ
101: RRPLPDYLEK VQKDVSANMR GVLVDWLVEV TDEYKLLSDT LYLTVSYIDR FLSVNVIPRQ KLQLLGVSSM LIAAKYEEIS PPDVGEFCYI TDNTYSKKEM
201: VKMEAEVLKC LNFEMGNPTI KTFLGRFTKI AQEDYKKNNL QLEFLGYYLA ELSLLDYNCV KFLPSLVAAA VIFLSRFTLQ PKSHPWSLAL QRCSGYRPGD
301: LKECVLIIHD LQLSRRGSAL SAVRDKYKLH KFKCVSTLSS PLEIPDSFFE DTRQ
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.