Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G078300.1 | Wheat | nucleus | 95.71 | 96.23 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 95.44 | 96.22 |
| TraesCS4A01G236700.2 | Wheat | plastid | 94.91 | 94.4 |
| OQU91386 | Sorghum | nucleus | 55.5 | 79.31 |
| Zm00001d033365_P002 | Maize | nucleus | 74.53 | 74.73 |
| Zm00001d013744_P001 | Maize | nucleus | 67.02 | 70.03 |
| GSMUA_Achr10P... | Banana | nucleus | 56.3 | 66.25 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 65.68 | 62.66 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 59.79 | 61.1 |
| KRH52056 | Soybean | nucleus | 34.32 | 60.66 |
| PGSC0003DMT400030222 | Potato | nucleus | 55.76 | 58.76 |
| PGSC0003DMT400030176 | Potato | nucleus | 55.76 | 58.43 |
| CDY06752 | Canola | nucleus | 44.5 | 58.25 |
| Solyc12g088500.1.1 | Tomato | nucleus | 54.96 | 57.91 |
| PGSC0003DMT400055428 | Potato | nucleus | 56.84 | 57.61 |
| CDY22369 | Canola | nucleus | 54.16 | 57.55 |
| Solyc04g078310.2.1 | Tomato | nucleus | 56.84 | 57.14 |
| Solyc12g088470.1.1 | Tomato | nucleus | 54.96 | 56.94 |
| Bra033658.1-P | Field mustard | nucleus | 54.16 | 56.74 |
| Solyc12g088520.1.1 | Tomato | nucleus | 53.62 | 56.34 |
| Solyc12g088530.1.1 | Tomato | nucleus | 53.08 | 55.93 |
| AT5G43080.1 | Thale cress | nucleus | 52.81 | 55.49 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 66.49 | 54.63 |
| CDY66770 | Canola | nucleus | 51.74 | 53.31 |
| CDY17091 | Canola | nucleus | 50.94 | 53.07 |
| CDY17037 | Canola | nucleus, plastid | 51.74 | 53.02 |
| KRH15427 | Soybean | nucleus, plastid | 51.47 | 52.75 |
| Bra032220.1-P | Field mustard | nucleus | 50.4 | 52.66 |
| KRH61375 | Soybean | nucleus | 46.11 | 52.6 |
| KRH61369 | Soybean | nucleus | 46.11 | 52.6 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 51.21 | 52.47 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 52.01 | 52.43 |
| CDY23653 | Canola | nucleus | 50.13 | 52.38 |
| CDY47595 | Canola | nucleus, plastid | 51.74 | 52.02 |
| KRH61371 | Soybean | nucleus | 48.53 | 51.86 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 50.4 | 51.79 |
| CDY06757 | Canola | nucleus, plastid | 50.4 | 51.79 |
| KRH52055 | Soybean | nucleus | 49.6 | 51.68 |
| CDY47596 | Canola | nucleus | 50.13 | 51.52 |
| Bra040793.1-P | Field mustard | nucleus | 50.13 | 51.52 |
| KRH05614 | Soybean | nucleus | 50.67 | 51.5 |
| AT1G47220.1 | Thale cress | nucleus | 45.04 | 51.38 |
| CDY17039 | Canola | nucleus | 49.87 | 51.24 |
| Bra040710.1-P | Field mustard | nucleus | 50.67 | 50.94 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 46.38 | 50.73 |
| AT1G47210.2 | Thale cress | nucleus | 50.4 | 50.54 |
| PGSC0003DMT400056625 | Potato | nucleus | 50.13 | 49.21 |
| Solyc10g049360.1.1 | Tomato | nucleus | 49.33 | 48.68 |
| KRH61373 | Soybean | nucleus, plastid | 47.99 | 47.73 |
| Os03t0607600-00 | Rice | nucleus | 69.17 | 42.43 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 40.48 | 36.39 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 28.42 | 33.12 |
| HORVU1Hr1G068080.1 | Barley | plastid | 28.95 | 31.58 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 41.29 | 30.37 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 21.18 | 28.42 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 31.64 | 28.1 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 33.24 | 27.99 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 33.24 | 27.99 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 31.9 | 27.17 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 32.98 | 27.15 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 28.69 | 25.48 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 30.03 | 22.76 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 28.69 | 22.72 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EMBL:AK376177 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | UniProt:F2EJ50 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU4Hr1G013320 | EnsemblPlants:HORVU4Hr1G013320.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002008BF5 |
| SEG:seg | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EJ50]
Coordinates
chrchr4H:+:46307715..46310046
Molecular Weight (calculated)
41536.0 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.313
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENSAYD AAAAAPRITR ASAKRAAAVT AVAVAAKRKR VALSEIPTLP NAAPQPHTKP KKPSSQAAKP KKKSLSFLSL PAPPKPAPDA ADENGDPQLC
101: APYASDIYSY LRSMEVQARR RPAADYIERV QVDVTPNMRG ILVDWLVEVA EEYKLVSDTL YLTVSYIDRF LSSNSLNRQK LQLLGVSAML IASKYEEISP
201: PNVEDFCYIT DNTYMKQELV KMERDILNNL KFEMGNPTAK TFLRMFIKSG QEDKKYPSLL LEFMGSYLTE LSLLDYACVR FLPSAVAASA VFVARLTLNP
301: DSNPWSKKLQ SVTGYRASEL KDCITAIHDL QLSRKGQSWN AIRDKYKQHR FKGVSALLPP VGIPASYFED LKE
101: APYASDIYSY LRSMEVQARR RPAADYIERV QVDVTPNMRG ILVDWLVEVA EEYKLVSDTL YLTVSYIDRF LSSNSLNRQK LQLLGVSAML IASKYEEISP
201: PNVEDFCYIT DNTYMKQELV KMERDILNNL KFEMGNPTAK TFLRMFIKSG QEDKKYPSLL LEFMGSYLTE LSLLDYACVR FLPSAVAASA VFVARLTLNP
301: DSNPWSKKLQ SVTGYRASEL KDCITAIHDL QLSRKGQSWN AIRDKYKQHR FKGVSALLPP VGIPASYFED LKE
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.