Factsheet for HORVU4Hr1G080410.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003280.5	nucleus
HORVU2Hr1G014000.1
HORVU2Hr1G068360.8
HORVU2Hr1G077130.1
HORVU2Hr1G107280.1
HORVU3Hr1G067470.2
HORVU3Hr1G114440.21	nucleus
HORVU4Hr1G013320.1	nucleus
HORVU4Hr1G013700.2	nucleus
HORVU4Hr1G069310.3	nucleus
HORVU4Hr1G085830.4
HORVU5Hr1G014320.7
HORVU5Hr1G018180.1	nucleus
HORVU5Hr1G018820.2	nucleus
HORVU5Hr1G050270.8	nucleus
HORVU5Hr1G059770.2	endoplasmic reticulum
HORVU5Hr1G093570.1
HORVU5Hr1G093590.1
HORVU6Hr1G013680.2
HORVU6Hr1G077500.1	nucleus
HORVU7Hr1G117300.3	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32710.1	HORVU2Hr1G068360.8	AT1G10840.1	20706207
AT2G32710.1	HORVU5Hr1G059770.2	AT1G70210.1	20407024
AT2G32710.1	HORVU2Hr1G077130.1	AT1G71380.1	20706207
AT2G32710.1	HORVU3Hr1G114440.21	AT1G80370.1	20407024
AT2G32710.1	HORVU4Hr1G085830.4	AT3G48750.1	11449057
AT2G32710.1	HORVU6Hr1G013680.2	AT3G48750.1	11449057
AT2G32710.1	HORVU4Hr1G085830.4	AT3G48750.1	20706207
AT2G32710.1	HORVU6Hr1G013680.2	AT3G48750.1	20706207
AT2G32710.1	HORVU5Hr1G014320.7	AT3G54650.1	18948957
AT2G32710.1	HORVU5Hr1G093570.1	AT3G54650.1	18948957
AT2G32710.1	HORVU5Hr1G093590.1	AT3G54650.1	18948957
AT2G32710.1	HORVU0Hr1G003280.5	AT4G03270.1	20407024
AT2G32710.1	HORVU7Hr1G117300.3	AT4G03270.1	20407024
AT2G32710.1	HORVU5Hr1G050270.8	AT4G34160.1	20407024
AT2G32710.1	HORVU4Hr1G013700.2	AT4G37630.1	20407024
AT2G32710.1	HORVU5Hr1G018180.1	AT4G37630.1	20407024
AT2G32710.1	HORVU6Hr1G077500.1	AT5G10440.1	20407024
AT2G32710.1	HORVU4Hr1G013320.1	AT5G43080.1	20407024
AT2G32710.1	HORVU4Hr1G069310.3	AT5G43080.1	20407024
AT2G32710.1	HORVU5Hr1G018820.2	AT5G43080.1	20407024
AT2G32710.1	HORVU2Hr1G014000.1	AT5G58290.1	20706207
AT2G32710.1	HORVU2Hr1G107280.1	AT5G58290.1	20706207
AT2G32710.1	HORVU3Hr1G067470.2	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G064490.1	Barley	nucleus	18.5	95.83
TraesCS5A01G506500.1	Wheat	nucleus	43.97	78.47
HORVU5Hr1G031690.1	Barley	extracellular	21.98	74.55
HORVU3Hr1G064580.1	Barley	nucleus	24.66	70.23
Os03t0137800-01	Rice	mitochondrion, nucleus, plastid	39.14	66.06
TraesCS4D01G332500.1	Wheat	nucleus	38.07	64.84
Zm00001d048363_P001	Maize	nucleus	33.24	57.67
EER95545	Sorghum	nucleus	32.71	57.28
Zm00001d027585_P001	Maize	nucleus	32.17	56.34
GSMUA_Achr11P...	Banana	nucleus	26.54	49.5
GSMUA_Achr8P12510_001	Banana	cytosol, mitochondrion, nucleus, plastid	24.4	47.4
GSMUA_Achr5P20430_001	Banana	nucleus	23.86	46.84
GSMUA_Achr2P11790_001	Banana	nucleus	25.2	46.31
GSMUA_Achr1P00900_001	Banana	nucleus	22.79	44.97
GSMUA_Achr11P...	Banana	nucleus	22.52	44.68
GSMUA_Achr5P12920_001	Banana	nucleus	24.66	41.63
KRG92238	Soybean	nucleus	24.66	41.07
GSMUA_Achr4P26490_001	Banana	nucleus	22.52	38.53
Solyc12g098310.1.1	Tomato	nucleus	22.52	36.21
PGSC0003DMT400076291	Potato	nucleus	20.11	35.89
Solyc09g091780.2.1	Tomato	nucleus	20.11	35.71
HORVU1Hr1G040110.3	Barley	nucleus, plastid	18.77	35.35
PGSC0003DMT400019919	Potato	nucleus	21.72	34.62
VIT_05s0029g00040.t01	Wine grape	nucleus	23.59	33.98
Bra005565.1-P	Field mustard	nucleus	19.57	32.3
CDX84726	Canola	nucleus	21.18	31.98
CDY59640	Canola	nucleus	10.72	31.75
CDY23793	Canola	nucleus	20.64	31.56
Bra022897.1-P	Field mustard	nucleus	20.91	31.2
CDX79470	Canola	nucleus	20.38	30.65
CDY12181	Canola	nucleus	19.57	30.54
AT2G32710.1	Thale cress	nucleus	23.06	29.76
Bra021808.1-P	Field mustard	nucleus	19.03	29.58
CDY19160	Canola	nucleus	19.03	29.22

Protein Annotations

MapMan:13.1.1.3.1	UniProt:A0A287PTU9	InterPro:CDI	GO:GO:0003674	GO:GO:0004860	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006469
GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0030234	GO:GO:0071901	EnsemblPlantsGene:HORVU4Hr1G080410	EnsemblPlants:HORVU4Hr1G080410.1	PFAM:PF02234	PANTHER:PTHR10265
PANTHER:PTHR10265:SF23	UniParc:UPI000B47EFC6	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:615347929..615351145

Molecular Weight (calculated)

41288.7 Da

IEP (calculated)

11.093

GRAVY (calculated)

-0.920

Length

373 amino acids

Sequence
(BLAST)

001: MLEDMPPNRH CNTGAPHPPL VPCHAFHVAR PRKPPNSHRE APTRRRRRSP NPKRESPPLS LSLSLTSLAR PIRARGSSSS SPIFSLSLAK YSERQRGAPE
101: PAKSRARSRP FSRYATQRSP LFPRFPLPRL NSPRLAPPTQ LSQLASQPPR RRRPEAGAMG KYMRKSKASG EVAVMEVAGA LLGVRTRSRT LAAQQQRAPS
201: PSPSPSPHRK GEHDPGAADY LELRSRRLEK QPPPGHKEKE DAPPPAAGAR RMAEQAAASF AADGFEADLE ASFGDNVLDW DAADRGTRET TPCSLIYSSE
301: TMSTPGSATR ASNPSRRRPQ TPVCRYVPSS LEMDEFFAAA EQQQHQTFRD KYNFCPASER PLPGRYEWTA LDC

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.