Factsheet for PGSC0003DMT400019919

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006576	nucleus
PGSC0003DMT400011661
PGSC0003DMT400021687
PGSC0003DMT400030176	nucleus
PGSC0003DMT400030222	nucleus
PGSC0003DMT400036934
PGSC0003DMT400037827	nucleus
PGSC0003DMT400039033	nucleus
PGSC0003DMT400040287	endoplasmic reticulum
PGSC0003DMT400041637	nucleus
PGSC0003DMT400047304
PGSC0003DMT400049672
PGSC0003DMT400051898
PGSC0003DMT400053010
PGSC0003DMT400055428	nucleus
PGSC0003DMT400055712
PGSC0003DMT400066557	nucleus
PGSC0003DMT400077428
PGSC0003DMT400078301

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32710.1	PGSC0003DMT400011661	AT1G10840.1	20706207
AT2G32710.1	PGSC0003DMT400055712	AT1G10840.1	20706207
AT2G32710.1	PGSC0003DMT400040287	AT1G70210.1	20407024
AT2G32710.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT2G32710.1	PGSC0003DMT400006576	AT1G80370.1	20407024
AT2G32710.1	PGSC0003DMT400077428	AT3G48750.1	11449057
AT2G32710.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT2G32710.1	PGSC0003DMT400049672	AT3G54650.1	18948957
AT2G32710.1	PGSC0003DMT400051898	AT3G54650.1	18948957
AT2G32710.1	PGSC0003DMT400039033	AT4G03270.1	20407024
AT2G32710.1	PGSC0003DMT400047304	AT4G28230.1	20706207
AT2G32710.1	PGSC0003DMT400066557	AT4G34160.1	20407024
AT2G32710.1	PGSC0003DMT400036934	AT5G07310.1	20706207
AT2G32710.1	PGSC0003DMT400037827	AT5G10440.1	20407024
AT2G32710.1	PGSC0003DMT400041637	AT5G10440.1	20407024
AT2G32710.1	PGSC0003DMT400030176	AT5G43080.1	20407024
AT2G32710.1	PGSC0003DMT400030222	AT5G43080.1	20407024
AT2G32710.1	PGSC0003DMT400055428	AT5G43080.1	20407024
AT2G32710.1	PGSC0003DMT400053010	AT5G58290.1	20706207
AT2G32710.1	PGSC0003DMT400078301	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098310.1.1	Tomato	nucleus	94.44	95.26
PGSC0003DMT400076291	Potato	nucleus	49.15	55.02
GSMUA_Achr8P12510_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.31	51.56
GSMUA_Achr11P...	Banana	nucleus	43.59	51.0
GSMUA_Achr5P20430_001	Banana	nucleus	40.17	49.47
GSMUA_Achr1P00900_001	Banana	nucleus	38.89	48.15
TraesCS1A01G151400.1	Wheat	nucleus	41.03	47.29
Os10t0471700-02	Rice	nucleus	38.89	46.91
TraesCS1D01G148400.2	Wheat	cytosol, nucleus, plastid	40.6	46.8
TraesCS1B01G168900.1	Wheat	cytosol, nucleus, plastid	40.6	46.8
EER91497	Sorghum	cytosol	37.61	46.07
PGSC0003DMT400045507	Potato	nucleus	38.89	45.96
Zm00001d014046_P001	Maize	nucleus	37.18	45.31
KRG92238	Soybean	nucleus	42.73	44.64
HORVU3Hr1G064490.1	Barley	nucleus	13.68	44.44
Zm00001d048363_P001	Maize	nucleus	40.17	43.72
GSMUA_Achr11P...	Banana	nucleus	35.04	43.62
EER95545	Sorghum	nucleus	38.89	42.72
GSMUA_Achr5P12920_001	Banana	nucleus	39.74	42.08
Os03t0137800-01	Rice	mitochondrion, nucleus, plastid	39.74	42.08
CDY59640	Canola	nucleus	22.65	42.06
Bra022897.1-P	Field mustard	nucleus	44.87	42.0
GSMUA_Achr2P11790_001	Banana	nucleus	36.32	41.87
Zm00001d027585_P001	Maize	nucleus	38.03	41.78
CDY23793	Canola	nucleus	43.16	41.39
CDX84726	Canola	nucleus	43.59	41.3
CDX79470	Canola	nucleus	43.59	41.13
CDY12181	Canola	nucleus	41.45	40.59
Bra005565.1-P	Field mustard	nucleus	38.03	39.38
Bra021808.1-P	Field mustard	nucleus	40.17	39.17
GSMUA_Achr1P20410_001	Banana	nucleus	38.03	38.86
CDY19160	Canola	nucleus	40.17	38.68
VIT_05s0029g00040.t01	Wine grape	nucleus	42.73	38.61
TraesCS5A01G506500.1	Wheat	nucleus	34.19	38.28
GSMUA_Achr6P36640_001	Banana	nucleus	40.17	38.21
GSMUA_Achr4P26490_001	Banana	nucleus	35.04	37.61
HORVU5Hr1G031690.1	Barley	extracellular	17.52	37.27
AT2G32710.1	Thale cress	nucleus	43.16	34.95
TraesCS4D01G332500.1	Wheat	nucleus	31.2	33.33
HORVU3Hr1G064580.1	Barley	nucleus	18.38	32.82
HORVU1Hr1G040110.3	Barley	nucleus, plastid	27.35	32.32
GSMUA_Achr5P21770_001	Banana	nucleus	37.61	30.14
Zm00001d032732_P002	Maize	mitochondrion	24.79	29.9
HORVU4Hr1G080410.1	Barley	nucleus	34.62	21.72

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0003824	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007049
GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	GO:GO:0030234	GO:GO:0071901	UniProt:M1ACS4	PFAM:PF02234
EnsemblPlantsGene:PGSC0003DMG400007708	PGSC:PGSC0003DMG400007708	EnsemblPlants:PGSC0003DMT400019919	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF30
UniParc:UPI000294D4DA	SEG:seg	:	:	:	:

Description

Cyclin dependent kinase inhibitor [Source:PGSC_GENE;Acc:PGSC0003DMG400007708]

Coordinates

chr12:+:59129288..59132386

Molecular Weight (calculated)

26595.4 Da

IEP (calculated)

10.314

GRAVY (calculated)

-1.165

Length

234 amino acids

Sequence
(BLAST)

001: MGKYMRKRKT KTTGEVVAVL DVSPLGVRTR AKTLALKRLQ KSSSGGGDGG DVGGGCYLQL RSRRLEKPLV GFERKRRKHP LKESKRQNRS LRVREMKGQS
101: WNSVSVEGEE EKKEEVHVQE NQKEIDNNGS FEGENLLEID GRERTTREST PCNLIRDPDN IPTPGSSTRP NNASEANGRE PTSAQRIIPT AHEMNDFFAG
201: TEEKQQKQFI EKYNFDPVND KPLPGRYKWV KVDR

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.