Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g078310.2.1 | Tomato | nucleus | 95.65 | 94.88 |
| PGSC0003DMT400030222 | Potato | nucleus | 73.1 | 75.99 |
| PGSC0003DMT400030176 | Potato | nucleus | 70.38 | 72.75 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 69.84 | 70.41 |
| OQU91386 | Sorghum | nucleus | 46.47 | 65.52 |
| KRH52056 | Soybean | nucleus | 37.5 | 65.4 |
| CDY06752 | Canola | nucleus | 49.46 | 63.86 |
| CDY22369 | Canola | nucleus | 58.97 | 61.82 |
| GSMUA_Achr10P... | Banana | nucleus | 52.45 | 60.88 |
| CDY66770 | Canola | nucleus | 59.24 | 60.22 |
| Bra033658.1-P | Field mustard | nucleus | 58.15 | 60.11 |
| CDY17091 | Canola | nucleus | 57.88 | 59.5 |
| KRH15427 | Soybean | nucleus, plastid | 58.7 | 59.34 |
| CDY06757 | Canola | nucleus, plastid | 58.42 | 59.23 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 58.42 | 59.23 |
| AT5G43080.1 | Thale cress | nucleus | 56.79 | 58.87 |
| CDY17037 | Canola | nucleus, plastid | 58.15 | 58.79 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 58.7 | 58.38 |
| KRH05614 | Soybean | nucleus | 57.88 | 58.04 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 57.34 | 57.97 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 58.15 | 57.68 |
| CDY47595 | Canola | nucleus, plastid | 58.15 | 57.68 |
| Bra040793.1-P | Field mustard | nucleus | 56.79 | 57.58 |
| CDY47596 | Canola | nucleus | 56.79 | 57.58 |
| CDY17039 | Canola | nucleus | 56.52 | 57.3 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 57.61 | 57.3 |
| KRH61375 | Soybean | nucleus | 50.82 | 57.19 |
| Bra032220.1-P | Field mustard | nucleus | 55.43 | 57.14 |
| Bra040710.1-P | Field mustard | nucleus | 57.61 | 57.14 |
| AT1G47210.2 | Thale cress | nucleus | 57.61 | 56.99 |
| CDY23653 | Canola | nucleus | 55.16 | 56.86 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 57.61 | 56.84 |
| TraesCS4A01G236700.2 | Wheat | plastid | 57.88 | 56.8 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 43.21 | 55.59 |
| KRH61369 | Soybean | nucleus | 48.64 | 54.74 |
| KRH52055 | Soybean | nucleus | 52.72 | 54.19 |
| KRH61371 | Soybean | nucleus | 51.36 | 54.15 |
| AT1G47220.1 | Thale cress | nucleus | 47.55 | 53.52 |
| Zm00001d033365_P002 | Maize | nucleus | 54.08 | 53.49 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 56.79 | 53.45 |
| Zm00001d013744_P001 | Maize | nucleus | 50.82 | 52.38 |
| TraesCS5B01G078200.1 | Wheat | plastid | 53.53 | 52.25 |
| TraesCS5A01G072000.1 | Wheat | plastid | 52.99 | 51.86 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 53.26 | 51.85 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 50.27 | 51.39 |
| KRH61373 | Soybean | nucleus, plastid | 51.63 | 50.67 |
| Os12t0581800-01 | Rice | nucleus, plastid | 52.72 | 50.39 |
| PGSC0003DMT400056625 | Potato | nucleus | 51.36 | 49.74 |
| Zm00001d030849_P001 | Maize | nucleus | 56.52 | 49.17 |
| EES16237 | Sorghum | nucleus, plastid | 56.25 | 48.36 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 30.71 | 46.31 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 54.62 | 46.0 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 52.45 | 42.51 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 42.93 | 42.02 |
| EER95303 | Sorghum | nucleus, plastid | 41.85 | 40.42 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 41.58 | 40.26 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 41.3 | 40.0 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 36.41 | 39.07 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 35.87 | 38.71 |
| PGSC0003DMT400075380 | Potato | nucleus | 24.18 | 37.55 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 41.85 | 37.11 |
| PGSC0003DMT400006576 | Potato | nucleus | 42.66 | 33.91 |
| PGSC0003DMT400015424 | Potato | plastid | 42.66 | 33.26 |
| PGSC0003DMT400067117 | Potato | plastid | 44.84 | 33.2 |
| Os03t0607600-00 | Rice | nucleus | 51.63 | 31.25 |
| PGSC0003DMT400093973 | Potato | nucleus | 27.72 | 30.91 |
| Os03t0208700-00 | Rice | nucleus | 32.61 | 29.34 |
| Zm00001d048127_P001 | Maize | plastid | 37.5 | 28.81 |
| PGSC0003DMT400048062 | Potato | nucleus | 30.71 | 26.22 |
| PGSC0003DMT400003868 | Potato | nucleus | 30.71 | 26.1 |
| PGSC0003DMT400025854 | Potato | nucleus | 31.25 | 26.08 |
| PGSC0003DMT400058457 | Potato | nucleus | 29.62 | 26.08 |
| PGSC0003DMT400018480 | Potato | nucleus | 29.62 | 25.65 |
| PGSC0003DMT400015245 | Potato | nucleus | 30.16 | 25.28 |
| PGSC0003DMT400072211 | Potato | nucleus | 28.8 | 22.84 |
| Os03t0208800-00 | Rice | nucleus | 16.85 | 15.62 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102580144 | MapMan:13.1.1.1.1 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| UniProt:M1BXW7 | PFAM:PF00134 | PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400021519 | PGSC:PGSC0003DMG400021519 | EnsemblPlants:PGSC0003DMT400055428 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0002964C89 | RefSeq:XP_006362078.1 | SEG:seg | : | : |
Description
Cyclin A [Source:PGSC_GENE;Acc:PGSC0003DMG400021519]
Coordinates
chr4:+:67442676..67445057
Molecular Weight (calculated)
42206.1 Da
IEP (calculated)
8.418
GRAVY (calculated)
-0.324
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSENCGRV TRLAKKRAAE GMAPQEQRRP SKKRVVLGEI QNFSIVGLKQ IKGLESKIQK PKSKKKVKRV VTCKTVDEKE VSAIDDDVDD PQMCTTYVSD
101: IYDYLRKMEI DEKRRPLPDY LEKVQKDVSA TMRGILVDWL VEVSEEYKLL SDTLYLTVSY LDRFLSTNVI TRQKLQLLGV SSMLIAAKYE EISPPHVEDF
201: CYITDNTYTK EEVVKMEADV LNSLQFEMGN PTVKTFLRRF TGIAQEEYKT PNLQLEFLGY YLSELSIMDY SCVKFLPSLV AASVMFLSRF TLQPNAHPWS
301: AALQRYSGYK ASDLKECVLI LHDLQLSRRG GSLVAVRDKY KQHKFKCVST LTSLVEIPAS FFEDTRQL
101: IYDYLRKMEI DEKRRPLPDY LEKVQKDVSA TMRGILVDWL VEVSEEYKLL SDTLYLTVSY LDRFLSTNVI TRQKLQLLGV SSMLIAAKYE EISPPHVEDF
201: CYITDNTYTK EEVVKMEADV LNSLQFEMGN PTVKTFLRRF TGIAQEEYKT PNLQLEFLGY YLSELSIMDY SCVKFLPSLV AASVMFLSRF TLQPNAHPWS
301: AALQRYSGYK ASDLKECVLI LHDLQLSRRG GSLVAVRDKY KQHKFKCVST LTSLVEIPAS FFEDTRQL
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.