Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 65.73 | 81.07 |
| OQU91386 | Sorghum | nucleus | 46.55 | 69.73 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 62.92 | 66.49 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 62.4 | 65.77 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 62.66 | 65.68 |
| TraesCS4A01G236700.2 | Wheat | plastid | 62.15 | 64.8 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 47.31 | 64.69 |
| KRH52056 | Soybean | nucleus | 34.02 | 63.03 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 58.57 | 62.74 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 59.59 | 61.64 |
| TraesCS5A01G072000.1 | Wheat | plastid | 59.08 | 61.44 |
| Os12t0581800-01 | Rice | nucleus, plastid | 60.36 | 61.3 |
| Zm00001d033365_P002 | Maize | nucleus | 58.31 | 61.29 |
| TraesCS5B01G078200.1 | Wheat | plastid | 59.08 | 61.27 |
| CDY06752 | Canola | nucleus | 43.99 | 60.35 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 55.5 | 60.28 |
| PGSC0003DMT400030222 | Potato | nucleus | 53.96 | 59.6 |
| Zm00001d013744_P001 | Maize | nucleus | 53.45 | 58.54 |
| Solyc12g088530.1.1 | Tomato | nucleus | 52.94 | 58.47 |
| Solyc12g088500.1.1 | Tomato | nucleus | 52.69 | 58.19 |
| PGSC0003DMT400030176 | Potato | nucleus | 52.94 | 58.15 |
| AT5G43080.1 | Thale cress | nucleus | 52.69 | 58.03 |
| CDY22369 | Canola | nucleus | 51.66 | 57.55 |
| Solyc12g088470.1.1 | Tomato | nucleus | 52.94 | 57.5 |
| Solyc04g078310.2.1 | Tomato | nucleus | 53.96 | 56.87 |
| PGSC0003DMT400055428 | Potato | nucleus | 53.45 | 56.79 |
| Bra033658.1-P | Field mustard | nucleus | 51.66 | 56.74 |
| Solyc12g088520.1.1 | Tomato | nucleus | 51.15 | 56.34 |
| EES16237 | Sorghum | nucleus, plastid | 61.38 | 56.07 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 52.69 | 55.68 |
| Zm00001d030849_P001 | Maize | nucleus | 59.85 | 55.32 |
| CDY17091 | Canola | nucleus | 50.64 | 55.31 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 51.41 | 55.22 |
| CDY17037 | Canola | nucleus, plastid | 51.15 | 54.95 |
| CDY47595 | Canola | nucleus, plastid | 51.41 | 54.18 |
| CDY66770 | Canola | nucleus | 50.13 | 54.14 |
| Bra040710.1-P | Field mustard | nucleus | 51.15 | 53.91 |
| KRH15427 | Soybean | nucleus, plastid | 50.13 | 53.85 |
| KRH52055 | Soybean | nucleus | 49.1 | 53.63 |
| Bra032220.1-P | Field mustard | nucleus | 48.85 | 53.5 |
| CDY47596 | Canola | nucleus | 49.62 | 53.44 |
| Bra040793.1-P | Field mustard | nucleus | 49.62 | 53.44 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 59.59 | 53.32 |
| CDY23653 | Canola | nucleus | 48.59 | 53.22 |
| CDY06757 | Canola | nucleus, plastid | 49.36 | 53.17 |
| CDY17039 | Canola | nucleus | 49.36 | 53.17 |
| KRH61375 | Soybean | nucleus | 44.25 | 52.91 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 49.1 | 52.89 |
| KRH61369 | Soybean | nucleus | 43.99 | 52.6 |
| KRH05614 | Soybean | nucleus | 49.36 | 52.59 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 45.78 | 52.49 |
| KRH61371 | Soybean | nucleus | 46.55 | 52.15 |
| AT1G47210.2 | Thale cress | nucleus | 49.1 | 51.61 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 59.85 | 51.54 |
| AT1G47220.1 | Thale cress | nucleus | 42.97 | 51.38 |
| KRH61373 | Soybean | nucleus, plastid | 48.34 | 50.4 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 31.71 | 50.2 |
| Solyc10g049360.1.1 | Tomato | nucleus | 47.06 | 48.68 |
| PGSC0003DMT400056625 | Potato | nucleus | 46.55 | 47.89 |
| Os03t0607600-00 | Rice | nucleus | 57.8 | 37.17 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 45.01 | 35.06 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 43.99 | 34.4 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 18.16 | 32.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.81 | 32.55 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 42.46 | 30.63 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 28.9 | 28.11 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 29.92 | 27.53 |
| GSMUA_Achr11P... | Banana | nucleus | 27.11 | 25.98 |
| GSMUA_Achr10P... | Banana | nucleus | 29.67 | 25.61 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 28.13 | 25.29 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 27.11 | 25.24 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 29.41 | 25.16 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 27.11 | 25.0 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 29.41 | 17.22 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr6G11130_001 | EnsemblPlants:GSMUA_Achr6P11130_001 |
| EnsemblPlants:GSMUA_Achr6T11130_001 | UniProt:M0T612 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002953C98 |
| SEG:seg | : | : | : | : | : |
Description
Cyclin-A3-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G11130_001]
Coordinates
chr6:-:7413703..7417368
Molecular Weight (calculated)
44187.1 Da
IEP (calculated)
8.424
GRAVY (calculated)
-0.319
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENCAPR LTRAAAKRAA SAQVPSSPAQ PPAKRKRVAL SELPTLSNVV TLATADPSTP PPSKLKSKPR KKVEESDDRE LARVEVATSS DGGSDVDDPQ
101: MCAHYASDIY QYLRSMEVEA KRRPLAKYME TVQSDVTANM RSILVDWLVE VAEEYKLVSD TLHLTISYID RFLSFNAINR QRLQLLGVSS MLIASKYEEI
201: SPPNVEDFCY ITDNTYTKQE VVKMESDILK FLRFEMGNPT IKTFLRRFIQ AGQEDGKYSN LQFEFLGSYL AELSLLDYGC VQFLPSVIAA SAVFVARFTL
301: DPKSNPWNKR LKECTGYNVS DLKECIHAIL DLQLNKKAST LLSIRDKYKQ HRFKCVPSLV PPTEIPAIYF NDPKLYTKDL RRTELLLLSS V
101: MCAHYASDIY QYLRSMEVEA KRRPLAKYME TVQSDVTANM RSILVDWLVE VAEEYKLVSD TLHLTISYID RFLSFNAINR QRLQLLGVSS MLIASKYEEI
201: SPPNVEDFCY ITDNTYTKQE VVKMESDILK FLRFEMGNPT IKTFLRRFIQ AGQEDGKYSN LQFEFLGSYL AELSLLDYGC VQFLPSVIAA SAVFVARFTL
301: DPKSNPWNKR LKECTGYNVS DLKECIHAIL DLQLNKKAST LLSIRDKYKQ HRFKCVPSLV PPTEIPAIYF NDPKLYTKDL RRTELLLLSS V
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.