Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032220.1-P | Field mustard | nucleus | 83.33 | 86.83 |
| CDY23653 | Canola | nucleus | 83.06 | 86.55 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 84.14 | 86.23 |
| CDY06757 | Canola | nucleus, plastid | 83.87 | 85.95 |
| CDY66770 | Canola | nucleus | 83.33 | 85.64 |
| CDY47596 | Canola | nucleus | 80.65 | 82.64 |
| Bra040793.1-P | Field mustard | nucleus | 80.11 | 82.09 |
| CDY17039 | Canola | nucleus | 79.57 | 81.54 |
| AT5G43080.1 | Thale cress | nucleus | 71.24 | 74.65 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 72.31 | 72.7 |
| AT1G47220.1 | Thale cress | nucleus | 63.44 | 72.17 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 59.41 | 60.55 |
| KRH52056 | Soybean | nucleus | 34.14 | 60.19 |
| Solyc12g088530.1.1 | Tomato | nucleus | 56.99 | 59.89 |
| PGSC0003DMT400030222 | Potato | nucleus | 55.38 | 58.19 |
| PGSC0003DMT400055428 | Potato | nucleus | 56.99 | 57.61 |
| PGSC0003DMT400030176 | Potato | nucleus | 54.84 | 57.3 |
| Solyc04g078310.2.1 | Tomato | nucleus | 56.72 | 56.87 |
| OQU91386 | Sorghum | nucleus | 39.78 | 56.7 |
| KRH15427 | Soybean | nucleus, plastid | 54.84 | 56.04 |
| GSMUA_Achr10P... | Banana | nucleus | 47.04 | 55.2 |
| Solyc12g088500.1.1 | Tomato | nucleus | 52.42 | 55.08 |
| KRH05614 | Soybean | nucleus | 54.3 | 55.04 |
| Solyc12g088520.1.1 | Tomato | nucleus | 52.42 | 54.93 |
| Solyc12g088470.1.1 | Tomato | nucleus | 52.69 | 54.44 |
| KRH61375 | Soybean | nucleus | 47.04 | 53.52 |
| KRH61369 | Soybean | nucleus | 46.77 | 53.21 |
| KRH61371 | Soybean | nucleus | 47.85 | 51.0 |
| KRH52055 | Soybean | nucleus | 48.92 | 50.84 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 50.54 | 50.81 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 50.27 | 50.4 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 50.54 | 50.4 |
| Zm00001d033365_P002 | Maize | nucleus | 49.73 | 49.73 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 38.17 | 49.65 |
| TraesCS4A01G236700.2 | Wheat | plastid | 49.73 | 49.33 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 51.61 | 49.1 |
| KRH61373 | Soybean | nucleus, plastid | 49.46 | 49.07 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 46.24 | 47.78 |
| TraesCS5B01G078200.1 | Wheat | plastid | 47.85 | 47.21 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 47.31 | 46.56 |
| TraesCS5A01G072000.1 | Wheat | plastid | 47.04 | 46.54 |
| Zm00001d013744_P001 | Maize | nucleus | 43.82 | 45.66 |
| Os12t0581800-01 | Rice | nucleus, plastid | 45.97 | 44.42 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 28.23 | 43.03 |
| Zm00001d030849_P001 | Maize | nucleus | 47.85 | 42.08 |
| EES16237 | Sorghum | nucleus, plastid | 47.85 | 41.59 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 40.59 | 40.16 |
| EER95303 | Sorghum | nucleus, plastid | 41.13 | 40.16 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 47.04 | 40.05 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 40.59 | 39.74 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 40.32 | 39.47 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 47.04 | 38.55 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 34.14 | 37.03 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 33.06 | 36.07 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 43.01 | 35.56 |
| AT5G25380.4 | Thale cress | plastid | 41.94 | 35.21 |
| AT5G11300.1 | Thale cress | plastid | 40.59 | 34.63 |
| AT1G44110.1 | Thale cress | plastid | 42.2 | 34.13 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 37.63 | 33.73 |
| AT1G80370.1 | Thale cress | plastid | 41.67 | 33.62 |
| AT1G77390.1 | Thale cress | plastid | 38.44 | 32.35 |
| AT3G11520.1 | Thale cress | nucleus | 32.53 | 29.23 |
| Os03t0607600-00 | Rice | nucleus | 47.58 | 29.11 |
| Zm00001d048127_P001 | Maize | plastid | 37.1 | 28.81 |
| AT2G26760.1 | Thale cress | nucleus | 29.3 | 28.17 |
| AT5G06150.1 | Thale cress | nucleus | 33.06 | 27.64 |
| AT4G35620.1 | Thale cress | nucleus | 31.45 | 27.27 |
| Os03t0208700-00 | Rice | nucleus | 29.84 | 27.14 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 19.09 | 26.79 |
| AT4G37490.1 | Thale cress | nucleus | 30.65 | 26.64 |
| AT2G17620.1 | Thale cress | nucleus | 30.11 | 26.11 |
| AT1G20610.1 | Thale cress | nucleus | 29.57 | 25.64 |
| AT1G76310.3 | Thale cress | nucleus | 30.11 | 24.4 |
| AT1G34460.5 | Thale cress | cytosol | 21.77 | 16.27 |
| AT1G16330.1 | Thale cress | nucleus | 28.23 | 16.2 |
| Os03t0208800-00 | Rice | nucleus | 13.98 | 13.1 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:841124 | UniProt:A0A178WIN4 | ProteinID:AAG50627.1 | ProteinID:AAG52639.1 |
| ProteinID:AEE32138.1 | ArrayExpress:AT1G47210 | EnsemblPlantsGene:AT1G47210 | RefSeq:AT1G47210 | TAIR:AT1G47210 | RefSeq:AT1G47210-TAIR-G |
| EnsemblPlants:AT1G47210.2 | TAIR:AT1G47210.2 | EMBL:AY064987 | EMBL:AY084924 | EMBL:AY113013 | Symbol:CYCA3;2 |
| InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0051301 | RefSeq:NP_564499.3 | ProteinID:OAP18238.1 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 | UniProt:Q9C6A9 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI00000A77DA | SEG:seg | : | : | : | : |
Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
Coordinates
chr1:+:17300691..17302914
Molecular Weight (calculated)
42463.8 Da
IEP (calculated)
8.916
GRAVY (calculated)
-0.246
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.