Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030849_P001 | Maize | nucleus | 88.55 | 89.6 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 87.62 | 85.81 |
| OQU91386 | Sorghum | nucleus | 43.93 | 72.03 |
| TraesCS5B01G078200.1 | Wheat | plastid | 62.85 | 71.35 |
| TraesCS5A01G072000.1 | Wheat | plastid | 62.62 | 71.28 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 62.38 | 70.63 |
| Os12t0581800-01 | Rice | nucleus, plastid | 62.62 | 69.61 |
| GSMUA_Achr10P... | Banana | nucleus | 47.43 | 64.04 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 52.8 | 61.92 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 56.07 | 61.38 |
| KRH52056 | Soybean | nucleus | 30.14 | 61.14 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 62.38 | 58.81 |
| CDY06752 | Canola | nucleus | 38.08 | 57.19 |
| Solyc04g078310.2.1 | Tomato | nucleus | 48.83 | 56.33 |
| PGSC0003DMT400055428 | Potato | nucleus | 48.36 | 56.25 |
| PGSC0003DMT400030222 | Potato | nucleus | 46.26 | 55.93 |
| Solyc12g088530.1.1 | Tomato | nucleus | 46.26 | 55.93 |
| AT5G43080.1 | Thale cress | nucleus | 46.26 | 55.77 |
| Solyc12g088500.1.1 | Tomato | nucleus | 46.03 | 55.65 |
| PGSC0003DMT400030176 | Potato | nucleus | 46.26 | 55.62 |
| KRH15427 | Soybean | nucleus, plastid | 47.2 | 55.49 |
| Solyc12g088520.1.1 | Tomato | nucleus | 46.03 | 55.49 |
| CDY22369 | Canola | nucleus | 45.33 | 55.27 |
| Solyc12g088470.1.1 | Tomato | nucleus | 46.26 | 55.0 |
| Bra033658.1-P | Field mustard | nucleus | 45.33 | 54.49 |
| KRH61375 | Soybean | nucleus | 40.89 | 53.52 |
| KRH05614 | Soybean | nucleus | 45.56 | 53.13 |
| KRH61369 | Soybean | nucleus | 40.42 | 52.91 |
| KRH52055 | Soybean | nucleus | 43.93 | 52.51 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 45.09 | 52.16 |
| CDY17091 | Canola | nucleus | 42.99 | 51.4 |
| Bra032220.1-P | Field mustard | nucleus | 42.76 | 51.26 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 40.65 | 51.03 |
| CDY23653 | Canola | nucleus | 42.52 | 50.98 |
| CDY66770 | Canola | nucleus | 42.76 | 50.55 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 42.99 | 50.55 |
| CDY17037 | Canola | nucleus, plastid | 42.99 | 50.55 |
| Bra040793.1-P | Field mustard | nucleus | 42.76 | 50.41 |
| CDY47596 | Canola | nucleus | 42.76 | 50.41 |
| CDY47595 | Canola | nucleus, plastid | 43.69 | 50.4 |
| KRH61371 | Soybean | nucleus | 40.89 | 50.14 |
| CDY17039 | Canola | nucleus | 42.52 | 50.14 |
| Bra040710.1-P | Field mustard | nucleus | 43.22 | 49.87 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 42.06 | 49.59 |
| CDY06757 | Canola | nucleus, plastid | 42.06 | 49.59 |
| KRH61373 | Soybean | nucleus, plastid | 42.99 | 49.07 |
| AT1G47220.1 | Thale cress | nucleus | 36.68 | 48.01 |
| AT1G47210.2 | Thale cress | nucleus | 41.59 | 47.85 |
| PGSC0003DMT400056625 | Potato | nucleus | 41.12 | 46.32 |
| Solyc10g049360.1.1 | Tomato | nucleus | 40.89 | 46.3 |
| EER95303 | Sorghum | nucleus, plastid | 38.78 | 43.57 |
| OQU77084 | Sorghum | nucleus | 37.85 | 33.2 |
| KXG24389 | Sorghum | nucleus | 19.39 | 32.94 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 36.45 | 32.3 |
| KXG21616 | Sorghum | nucleus, plastid | 34.58 | 30.9 |
| EES03772 | Sorghum | nucleus, plastid | 27.57 | 26.28 |
| KXG20945 | Sorghum | nucleus | 23.13 | 23.35 |
| EES18429 | Sorghum | mitochondrion | 25.0 | 23.26 |
| EES12664 | Sorghum | nucleus | 22.2 | 21.99 |
| EES02793 | Sorghum | nucleus | 22.9 | 21.17 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:8074274 | UniProt:C5YQG8 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EnsemblPlants:EES16237 | ProteinID:EES16237 | ProteinID:EES16237.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | ProteinID:OQU79434.1 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 |
| EnsemblPlantsGene:SORBI_3008G143800 | SUPFAM:SSF47954 | UniParc:UPI0001A88672 | RefSeq:XP_002442399.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:+:57530435..57533540
Molecular Weight (calculated)
46433.5 Da
IEP (calculated)
8.245
GRAVY (calculated)
-0.164
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENAGPA AGPRLTRAAA KRAAAAAVAV AAEGPGDAKR RRVALGELPA LANNAAAGLR APSRPAKPSK PASRSGRHAR PGASEARGPA VAAAAAEAEL
101: CASSSPPRAA EADAESNSAS YSAPRATADT DSSFSSSPPR AAAAAAAAPA DLQFCGSYAS DIYTYLRSLE VEPQRRSRSD YIEAVQADVT AHMRSILVDW
201: LVEVAEEYKL VADTLYLAIS YVDRFLSVNA LGRDKLQLLG VASMLIAAKY EEISPPHPED FCYITDNTYT KEELLKMESD ILKLLKFELG NPTIKTFLRR
301: FTRYAHEDKK RSILLMEFLG SYLAELSLLD YGCLRFLPSV VAASVMFVAR LTIDPNVNPW NTKLQKMTGY KVSDLKDCIV AIHDLQLNRK CPSLMAIRDK
401: YKQHKFKCVS TLLPPVVIPA SYFEDLDE
101: CASSSPPRAA EADAESNSAS YSAPRATADT DSSFSSSPPR AAAAAAAAPA DLQFCGSYAS DIYTYLRSLE VEPQRRSRSD YIEAVQADVT AHMRSILVDW
201: LVEVAEEYKL VADTLYLAIS YVDRFLSVNA LGRDKLQLLG VASMLIAAKY EEISPPHPED FCYITDNTYT KEELLKMESD ILKLLKFELG NPTIKTFLRR
301: FTRYAHEDKK RSILLMEFLG SYLAELSLLD YGCLRFLPSV VAASVMFVAR LTIDPNVNPW NTKLQKMTGY KVSDLKDCIV AIHDLQLNRK CPSLMAIRDK
401: YKQHKFKCVS TLLPPVVIPA SYFEDLDE
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.