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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • plastid 4
  • cytosol 4
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d003258_P001 Maize plastid 97.9 98.07
TraesCS2D01G341600.1 Wheat cytosol 96.15 96.49
Os04t0484900-01 Rice cytosol 96.67 96.34
TraesCS2B01G361800.1 Wheat cytosol 95.97 96.31
TraesCS2A01G320900.1 Wheat cytosol 95.97 96.31
HORVU4Hr1G039630.1 Barley cytosol 10.68 92.42
GSMUA_Achr3P02630_001 Banana cytosol 79.86 91.57
VIT_17s0000g10190.t01 Wine grape cytosol 89.67 90.94
Solyc03g110910.2.1 Tomato cytosol, nucleus 89.49 90.44
PGSC0003DMT400039303 Potato cytosol 88.97 90.07
KRH63718 Soybean cytosol, nucleus 88.79 89.89
HORVU2Hr1G083870.1 Barley plasma membrane 96.15 89.56
KRH54237 Soybean cytosol, nucleus 87.92 89.01
AT5G50320.1 Thale cress cytosol 87.39 88.32
CDY34039 Canola cytosol 87.04 87.96
Bra000619.1-P Field mustard cytosol 87.04 87.96
CDX83163 Canola cytosol 86.87 87.79
Protein Annotations
MapMan:15.3.6.2.3Gene3D:3.40.630.30Gene3D:3.80.30.20EntrezGene:8073682InterPro:Acyl_CoA_acyltransferaseUniProt:C5YAW5
EnsemblPlants:EES12405ProteinID:EES12405ProteinID:EES12405.1InterPro:ELP3-likeInterPro:Elp3/MiaB/NifBInterPro:GNAT_dom
GO:GO:0002098GO:GO:0003674GO:GO:0003824GO:GO:0004402GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005719GO:GO:0005737GO:GO:0005829
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006357GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0007275GO:GO:0008080GO:GO:0008150GO:GO:0008152GO:GO:0008283
GO:GO:0009058GO:GO:0009294GO:GO:0009653GO:GO:0009719GO:GO:0009987GO:GO:0010928
GO:GO:0016043GO:GO:0016573GO:GO:0016740GO:GO:0016746GO:GO:0019538GO:GO:0033588
GO:GO:0035265GO:GO:0040007GO:GO:0046872GO:GO:0051536GO:GO:0090708GO:GO:2000025
InterPro:IPR000182InterPro:IPR023404PFAM:PF00583PFAM:PF04055PFAM:PF16199PIRSF:PIRSF005669
PFscan:PS51186PANTHER:PTHR11135PANTHER:PTHR11135:SF0InterPro:Radical_SAM_CSMART:SM00729EnsemblPlantsGene:SORBI_3006G125900
SUPFAM:SSF102114SUPFAM:SSF55729unigene:Sbi.7389TIGRFAMs:TIGR01211UniParc:UPI0001A87172RefSeq:XP_002448077.1
InterPro:rSAMInterPro:rSAM_horseshoeSEG:seg:::
Description
hypothetical protein
Coordinates
chr6:-:49124451..49128872
Molecular Weight (calculated)
63734.0 Da
IEP (calculated)
8.680
GRAVY (calculated)
-0.280
Length
571 amino acids
Sequence
(BLAST)
001: MATAAAAAVA APEQPRRRKP APGRGGVALP AGISEEEARV RAIAEIVSAM GELSRRGEDV DLNALKSAAC RRYGLARAPK LVEMIAAVPE ADRAALLPRL
101: RAKPVRTASG IAVVAVMSKP HRCPHIATTG NICVYCPGGP DSDFEYSTQS YTGYEPTSMR AIRARYNPYV QARSRIDQLK RLGHSVDKVE FILMGGTFMS
201: LPADYRDYFI RNLHDALSGH TSANVEEAIC YSEHSAVKCI GMTIETRPDY CLGPHLRQML SYGCTRLEIG VQSTYEDVAR DTNRGHTVAA VADCFCLAKD
301: AGFKVVAHMM PDLPNVGVER DLESFREFFE SPAFRADGLK IYPTLVIRGT GLYELWKTGR YRNYPPELLV DIVARILSMV PPWTRVYRVQ RDIPMPLVTS
401: GVEKGNLREL ALARMEDLGL KCRDVRTREA GIQDIHHKIR PDEVELVRRD YAANEGWETF LSYEDTRQDI LIGLLRLRKC GRNVTCPELV GRCSIVRELH
501: VYGTAVPVHG RDVDKLQHQG YGTLLMEEAE RIAQKEHRSK KLAVISGVGT RHYYRKLGYE LEGPYMVKTL A
Best Arabidopsis Sequence Match ( AT5G50320.1 )
(BLAST)
001: MATAVVMNGE LKKQPRPGKG GYQGRGLTEE EARVRAISEI VSTMIERSHR NENVDLNAIK TAACRKYGLA RAPKLVEMIA ALPDSERETL LPKLRAKPVR
101: TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR
201: DFFIRNLHDA LSGHTSANVE EAVAYSEHSA TKCIGMTIET RPDYCLGPHL RQMLIYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV
301: AHMMPDLPNV GVERDMESFK EFFESPSFRA DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN
401: LRELALARMD DLGLKCRDVR TREAGIQDIH HKIKPEQVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGKNVTC PELMGKCSVV RELHVYGTAV
501: PVHGRDADKL QHQGYGTLLM EEAERIARRE HRSNKIGVIS GVGTRHYYRK LGYELEGPYM VKHLL
Arabidopsis Description
HAG3Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGS1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.