Factsheet for VIT_17s0000g10190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63718	Soybean	cytosol, nucleus	94.49	94.33
Solyc03g110910.2.1	Tomato	cytosol, nucleus	94.49	94.16
PGSC0003DMT400039303	Potato	cytosol	94.14	93.97
KRH54237	Soybean	cytosol, nucleus	93.07	92.91
GSMUA_Achr3P02630_001	Banana	cytosol	80.64	91.16
AT5G50320.1	Thale cress	cytosol	91.3	90.97
Bra000619.1-P	Field mustard	cytosol	91.12	90.8
CDY34039	Canola	cytosol	91.12	90.8
CDX83163	Canola	cytosol	90.76	90.44
Zm00001d003258_P001	Maize	plastid	91.12	90.0
Os04t0484900-01	Rice	cytosol	91.3	89.7
EES12405	Sorghum	cytosol	90.94	89.67
TraesCS2B01G361800.1	Wheat	cytosol	90.59	89.63
TraesCS2D01G341600.1	Wheat	cytosol	90.59	89.63
Zm00001d025713_P001	Maize	plastid	90.76	89.49
TraesCS2A01G320900.1	Wheat	cytosol	90.41	89.46
HORVU4Hr1G039630.1	Barley	cytosol	10.48	89.39
HORVU2Hr1G083870.1	Barley	plasma membrane	90.59	83.2

Protein Annotations

EntrezGene:100263356	wikigene:100263356	MapMan:15.3.6.2.3	Gene3D:3.40.630.30	Gene3D:3.80.30.20	InterPro:Acyl_CoA_acyltransferase
ProteinID:CCB42893	ProteinID:CCB42893.1	InterPro:ELP3-like	InterPro:Elp3/MiaB/NifB	UniProt:F6GSF4	EMBL:FN594950
InterPro:GNAT_dom	GO:GO:0002098	GO:GO:0003674	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005719	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009058	GO:GO:0009294	GO:GO:0009653	GO:GO:0009719	GO:GO:0009987
GO:GO:0010928	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0016746	GO:GO:0019538
GO:GO:0033588	GO:GO:0035265	GO:GO:0040007	GO:GO:0046872	GO:GO:0051536	GO:GO:0090708
GO:GO:2000025	InterPro:IPR000182	InterPro:IPR023404	EntrezGene:LOC100263356	wikigene:LOC100263356	PFAM:PF00583
PFAM:PF04055	PFAM:PF16199	PIRSF:PIRSF005669	PFscan:PS51186	PANTHER:PTHR11135	PANTHER:PTHR11135:SF0
InterPro:Radical_SAM_C	SMART:SM00729	SUPFAM:SSF102114	SUPFAM:SSF55729	TIGR:TC60184	TIGR:TC64596
TIGRFAMs:TIGR01211	UniParc:UPI00015CDAB2	ArrayExpress:VIT_17s0000g10190	EnsemblPlantsGene:VIT_17s0000g10190	EnsemblPlants:VIT_17s0000g10190.t01	unigene:Vvi.11825
RefSeq:XP_002262701	RefSeq:XP_002262701.1	InterPro:rSAM	InterPro:rSAM_horseshoe	SEG:seg	:

Description

Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:F6GSF4]

Coordinates

chr17:-:12379967..12388611

Molecular Weight (calculated)

63262.4 Da

IEP (calculated)

8.545

GRAVY (calculated)

-0.310

Length

563 amino acids

Sequence
(BLAST)

001: MATAVVAESR KLPRPGRGGV VSHGLSEEEA RVRAIAEIVN NMVELSHRGE NVDLNALKSA ACRKYGLSRA PKLVEMIAAL PESERDSLLP RLRAKPVRTA
101: SGIAVVAVMS KPHRCPHIAT TGNICVYCPG GPDSDFEYST QSYTGYEPTS MRAIRARYNP YVQARSRIDQ LKRLGHSVDK VEFILMGGTF MSLPAEYRDY
201: FTRNLHDALS GHTSANVEEA VAYSEHSAIK CIGMTIETRP DYCLGPHLRQ MLSYGCTRLE IGVQSTYEDV ARDTNRGHTV AAVADCFCLA KDAGFKVVAH
301: MMPDLPNVGV ERDLESFREF FESPMFRADG LKIYPTLVIR GTGLYELWKT GRYRNYPPEQ LVDIVARILA MVPPWTRVYR VQRDIPMPLV TSGVEKGNLR
401: ELALARMDDL GLKCRDVRTR EAGIQDIHHK IKPEEVELVR RDYTANEGWE TFLSYEDIRQ DILVGLLRLR KCGRNTTCPE LIGRCSIVRE LHVYGTAVPV
501: HGRDADKLQH QGYGTLLMEA AERIAGREHR STKIAVISGV GTRHYYRKLG YELEGPYMVK YLV

Best Arabidopsis Sequence Match ( AT5G50320.1 )
(BLAST)

001: MATAVVMNGE LKKQPRPGKG GYQGRGLTEE EARVRAISEI VSTMIERSHR NENVDLNAIK TAACRKYGLA RAPKLVEMIA ALPDSERETL LPKLRAKPVR
101: TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR
201: DFFIRNLHDA LSGHTSANVE EAVAYSEHSA TKCIGMTIET RPDYCLGPHL RQMLIYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV
301: AHMMPDLPNV GVERDMESFK EFFESPSFRA DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN
401: LRELALARMD DLGLKCRDVR TREAGIQDIH HKIKPEQVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGKNVTC PELMGKCSVV RELHVYGTAV
501: PVHGRDADKL QHQGYGTLLM EEAERIARRE HRSNKIGVIS GVGTRHYYRK LGYELEGPYM VKHLL

Arabidopsis Description

HAG3Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.