Factsheet for HORVU2Hr1G083870.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G341600.1	Wheat	cytosol	92.82	100.0
TraesCS2B01G361800.1	Wheat	cytosol	92.66	99.82
TraesCS2A01G320900.1	Wheat	cytosol	92.66	99.82
EES12405	Sorghum	cytosol	89.56	96.15
Os04t0484900-01	Rice	cytosol	89.56	95.81
Zm00001d025713_P001	Maize	plastid	89.23	95.8
Zm00001d003258_P001	Maize	plastid	89.07	95.79
HORVU4Hr1G039630.1	Barley	cytosol	10.28	95.45
GSMUA_Achr3P02630_001	Banana	cytosol	73.74	90.76
VIT_17s0000g10190.t01	Wine grape	cytosol	83.2	90.59
Solyc03g110910.2.1	Tomato	cytosol, nucleus	83.03	90.09
KRH63718	Soybean	cytosol, nucleus	82.71	89.89
PGSC0003DMT400039303	Potato	cytosol	82.71	89.89
KRH54237	Soybean	cytosol, nucleus	82.06	89.18
AT5G50320.1	Thale cress	cytosol	81.24	88.14
CDY34039	Canola	cytosol	81.08	87.96
Bra000619.1-P	Field mustard	cytosol	81.08	87.96
CDX83163	Canola	cytosol	80.91	87.79

Protein Annotations

MapMan:15.3.6.2.3	Gene3D:3.40.630.30	Gene3D:3.80.30.20	UniProt:A0A287IPG7	InterPro:Acyl_CoA_acyltransferase	InterPro:ELP3-like
InterPro:Elp3/MiaB/NifB	InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008080	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740
GO:GO:0016746	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	EnsemblPlantsGene:HORVU2Hr1G083870	EnsemblPlants:HORVU2Hr1G083870.1
InterPro:IPR000182	InterPro:IPR023404	PFAM:PF00583	PFAM:PF04055	PFAM:PF16199	PIRSF:PIRSF005669
PFscan:PS51186	PANTHER:PTHR11135	PANTHER:PTHR11135:SF0	InterPro:Radical_SAM_C	SMART:SM00729	SUPFAM:SSF102114
SUPFAM:SSF55729	TIGRFAMs:TIGR01211	UniParc:UPI000B473BA0	InterPro:rSAM	InterPro:rSAM_horseshoe	SEG:seg

Description

Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A287IPG7]

Coordinates

chrchr2H:+:608070575..608080273

Molecular Weight (calculated)

68297.5 Da

IEP (calculated)

9.477

GRAVY (calculated)

-0.385

Length

613 amino acids

Sequence
(BLAST)

001: MGGDASNRPV EKAKARHRPS PGPSFVPPSP RGKKKKNPSL KPFPMAAAVA AAAADQPRRR KPTPGRGGVV LPAGLSEEEA RVRAIAEIVS EMGELSRRGE
101: DVDLNALKSA ACRRYGLARA PKLVEMIAAV PEADRAALLP RLRAKPVRTA SGIAVVAVMS KPHRCPHIAT TGNICVYCPG GPDSDFEYST QSYTGYEPTS
201: MRAIRARYNP YVQARSRIDQ LKRLGHSADK VEFILMGGTF MSLPADYRDY FIRNLHDALS GHTSANVEEA VCYSEHSAVK CIGMTIETRP DYCLGPHLRQ
301: MLSYGCTRLE IGVQSTYEDV ARDTNRGHTV AAVADCFSLA KDAGFKVVAH MMPDLPNVGV ERDMESFREF FENPAFRADG LKIYPTLVIR GTGLYELWKT
401: GRYRNYPPEL LVDIVARILS MVPPWTRVYR VQRDIPMPLV TSGVEKGNLR ELALARMEDL GLKCRDVRTR EAGIQDIHHK IRPDEVELVR RDYAANDGWE
501: TFLSYEDTRQ DILIGLLRLR KCGRNVTGPE LVGRCSIVRE LHVYGTAVPV HGRDAEKLQH QGYGTLLMEE AERIARKEHR SKKLAVISGV GTRHYYRKLG
601: YELEGPYMVK CLA

Best Arabidopsis Sequence Match ( AT5G50320.1 )
(BLAST)

001: MATAVVMNGE LKKQPRPGKG GYQGRGLTEE EARVRAISEI VSTMIERSHR NENVDLNAIK TAACRKYGLA RAPKLVEMIA ALPDSERETL LPKLRAKPVR
101: TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR
201: DFFIRNLHDA LSGHTSANVE EAVAYSEHSA TKCIGMTIET RPDYCLGPHL RQMLIYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV
301: AHMMPDLPNV GVERDMESFK EFFESPSFRA DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN
401: LRELALARMD DLGLKCRDVR TREAGIQDIH HKIKPEQVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGKNVTC PELMGKCSVV RELHVYGTAV
501: PVHGRDADKL QHQGYGTLLM EEAERIARRE HRSNKIGVIS GVGTRHYYRK LGYELEGPYM VKHLL

Arabidopsis Description

HAG3Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.